Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors (doi:10.7910/DVN/3E1YSQ)

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Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
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Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors

doi:10.7910/DVN/3E1YSQ

Harvard Dataverse

2021-07-05

1

Uyoga, Sophie; Adetifa, Ifedayo M.O.; Otiende, Mark; Gitonga, John N.; Mugo, Daisy; Nyagwange, James; Karanja, Henry K.; Tuju, James; Makale, Johnstone; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng’ang’a, Wangari; Chege, Evelynn; Yegon, Christine; Kithi, Khamisi; Odhiambo, Elizabeth; Rotich, Thomas; Orgut, Irene; Kihara, Sammy; Bottomley, Christian; Kagucia, Eunice W.; Gallagher, Katherine E.; Etyang, Anthony; Voller, Shirine; Lambe,Teresa; Wright, Daniel; Barasa, Edwine; Tsofa, Benjamin; Mwangangi, Joseph; Bejon, Philip; Ochola-Oyier, Lynette I.; Warimwe, George M.; Agweyu, Ambrose; Scott, J. Anthony G., 2021, "Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors", https://doi.org/10.7910/DVN/3E1YSQ, Harvard Dataverse, V1, UNF:6:Bt/7QJL1Wm92kwX0Odn/UA== [fileUNF]

Replication Data for: Prevalence of SARS-CoV-2 Antibodies from a one-year National Serosurveillance of Kenyan Blood Transfusion Donors

doi:10.7910/DVN/3E1YSQ

Uyoga, Sophie (KEMRI-Wellcome Trust Research programme)

Adetifa, Ifedayo M.O. (KEMRI-Wellcome Trust Research programme; Department of Infectious Diseases Epidemiology, London School of Hygiene and Tropical Medicine, Keppel Street, London, United Kingdom.)

Otiende, Mark (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Gitonga, John N. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Mugo, Daisy (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Nyagwange, James (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Karanja, Henry K. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Tuju, James (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Makale, Johnstone (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Aman, Rashid (Ministry of Health, Government of Kenya, Nairobi, Kenya.)

Mwangangi, Mercy (Ministry of Health, Government of Kenya, Nairobi, Kenya)

Amoth, Patrick (Ministry of Health, Government of Kenya, Nairobi, Kenya)

Kasera, Kadondi (Ministry of Health, Government of Kenya, Nairobi, Kenya)

Ng’ang’a, Wangari (Presidential Policy & Strategy Unit, The Presidency, Government of Kenya.)

Chege, Evelynn (Kenya National Blood Transfusion Services, Ministry of Health, Nairobi, Kenya.)

Yegon, Christine (Kenya National Blood Transfusion Services, Ministry of Health, Nairobi, Kenya.)

Kithi, Khamisi (Kenya National Blood Transfusion Services, Ministry of Health, Nairobi, Kenya.)

Odhiambo, Elizabeth (Kenya National Blood Transfusion Services, Ministry of Health, Nairobi, Kenya.)

Rotich, Thomas (Kenya National Blood Transfusion Services, Ministry of Health, Nairobi, Kenya.)

Orgut, Irene (Kenya National Blood Transfusion Services, Ministry of Health, Nairobi, Kenya.)

Kihara, Sammy (Kenya National Blood Transfusion Services, Ministry of Health, Nairobi, Kenya.)

Bottomley, Christian (Department of Infectious Diseases Epidemiology, London School of Hygiene and Tropical Medicine, Keppel Street, London, United Kingdom.)

Kagucia, Eunice W. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.)

Gallagher, Katherine E. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Department of Infectious Diseases Epidemiology, London School of Hygiene and Tropical Medicine, Keppel Street, London, United Kingdom.)

Etyang, Anthony (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.)

Voller, Shirine (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Department of Infectious Diseases Epidemiology, London School of Hygiene and Tropical Medicine, Keppel Street, London, United Kingdom.)

Lambe,Teresa (Nuffield Department of Medicine, Oxford University, United Kingdom.)

Wright, Daniel (Nuffield Department of Medicine, Oxford University, United Kingdom.)

Barasa, Edwine (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.)

Tsofa, Benjamin (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.)

Mwangangi, Joseph (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.)

Bejon, Philip (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Nuffield Department of Medicine, Oxford University, United Kingdom.)

Ochola-Oyier, Lynette I. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Nuffield Department of Medicine, Oxford University, United Kingdom.)

Warimwe, George M. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Nuffield Department of Medicine, Oxford University, United Kingdom; Nuffield Department of Medicine, Oxford University, United Kingdom.)

Agweyu, Ambrose (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Nuffield Department of Medicine, Oxford University, United Kingdom; Nuffield Department of Medicine, Oxford University, United Kingdom.)

Scott, J. Anthony G. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Department of Infectious Diseases Epidemiology, London School of Hygiene and Tropical Medicine, Keppel Street, London, United Kingdom.)

Harvard Dataverse

Uyoga, Sophie

2021-07-05

https://doi.org/10.7910/DVN/3E1YSQ

Medicine, Health and Life Sciences, COVID-19, SARS-CoV-2, Sero-epidemiology

COVID-19, SARS-CoV-2

These data contain anonymised residual donor serum samples used for screening of transfusion transmissible infections collected at the KNBTS regional centres which has been used to compute standardised SARS-CoV-2 seroprevalence by age, sex and region using KNBS population as the standard population.

<p><strong>Data Access: </strong>Restricted </p> <p>Access to these data requires submission of a formal request for consideration by our Data Governance Committee. </p> <strong>How to request</strong> <ol> <li>Download and complete the <a href="https://kemri-wellcome.org/zp-content/uploads/2021/02/KWTRP_Dataverse_Data_Request_Form_2019.docx"><strong>data request form</strong></a></li> <li> Email completed data request form to the Data Governance Committee at <a href="mailto:dgc@kemri-wellcome.org?cc=lmwango@kemri-wellcome.org?Subject=Data%20Access%20Request"><strong>dgc@kemri-wellcome.org</strong></a> </li> </ol> <p><strong>License: </strong><a href="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</a> <a href="https://creativecommons.org/licenses/by/4.0/legalcode"><img src="https://i.creativecommons.org/l/by/3.0/88x31.png"> </a> </p>

<p>Publications based on this data collection should acknowledge this source by means of bibliographic citation.</p>

<p>This data is licensed under the <a href="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</a> <a href="https://creativecommons.org/licenses/by/4.0/legalcode"><img src="https://i.creativecommons.org/l/by/3.0/88x31.png"> </a> </p>

For access to data and more detailed information beyond the metadata and documentation provided, there is a process of managed access requiring submission of a request form for consideration by our Data Governance Committee [<a href="mailto:dgc@kemri-wellcome.org">dgc@kemri-wellcome.org</a> ]. <strong> <a href="https://kemri-wellcome.org/zp-content/uploads/2021/02/KWTRP_Dataverse_Data_Request_Form_2019.docx">Click to download Data Request Form</a></strong>

• Number of cases: 3028

• No. of variables per record: 7

• Type of File: text/tab-separated-values

UNF:6:I1dkigL2qgk8KAef4f3D/A==

• Number of cases: 3018

• No. of variables per record: 11

• Type of File: text/tab-separated-values

UNF:6:dy1mI0Rc9STRHMjv3663tQ==

• Number of cases: 4747

• No. of variables per record: 5

• Type of File: text/tab-separated-values

UNF:6:C1NSKEVBEfBTxhbn/9SsYg==

• Number of cases: 3062

• No. of variables per record: 26

• Type of File: text/tab-separated-values

UNF:6:3M7yOmZCphXfF0VTogQH2A==

• region - region
• sex - sex
• agecat - agecat
• pop - pop
• collect_date - collect_date
• spikepos - spikepos
• pw - pw

f4876974 Location:

Summary Statistics: Min. 1.0; Mean 4.644649933949766; Max. 8.0; StDev 1.9224856007293314; Valid 3028.0

Variable Format: numeric

Notes: UNF:6:IzmL+sZnzifIEjP+tuXf7Q==

f4876974 Location:

Variable Format: character

Notes: UNF:6:dqzlBwm7KwnqKatUMOpX/A==

f4876974 Location:

Variable Format: character

Notes: UNF:6:F3X89UW7X2JfyBNVeEzNww==

f4876974 Location:

Summary Statistics: Max. 1338739.0; Min. 17586.0; Valid 3028.0; StDev 344750.67906736693; Mean 520411.51717305125

Variable Format: numeric

Notes: UNF:6:XD3L1eYCy62ugfXmpuwEmw==

f4876974 Location:

Variable Format: character

Notes: UNF:6:Tum0aIQ90ps9FjLykhNW/A==

f4876974 Location:

Summary Statistics: Valid 3018.0; StDev 0.4966698011150079; Min. 0.0; Max. 1.0; Mean 0.44168323392975467;

Variable Format: numeric

Notes: UNF:6:QJXlNiN6lNQGpxAeoKSJZg==

f4876974 Location:

Summary Statistics: Valid 3028.0; StDev 0.012697922106217044; Mean 0.0191678952752576; Min. 6.4773089E-4; Max. 0.049308687;

Variable Format: numeric

Notes: UNF:6:xC+r534gI+QMYZTNL1ZFbw==

Label:

1.1_structuring_&_QC.do

application/x-stata-syntax

Label:

2.0_national_prevalence_age_sex_adjusted.do

application/x-stata-syntax

Label:

4.0_province_prevalence_age_sex_adjusted.do

application/x-stata-syntax

Label:

5.0_age_group_prevalence_region_sex_adjusted.do

application/x-stata-syntax

Label:

6.0_sex_prevalence_region_age_adjusted.do

application/x-stata-syntax

Label:

dataman_for_bayesian_model_prov7mom.do

application/x-stata-syntax

Label:

KNBTS Batch 3 Analysis Codebook.xlsx

Text:

Contains variable descriptions and value labels

application/vnd.openxmlformats-officedocument.spreadsheetml.sheet

Label:

KNBTS Batch 3 Analysis Readme.txt

text/plain

Label:

KNBTS_batch3_analysis.Rmd

application/octet-stream