Continent Summary Reproduction Number (R) Based on Reported Deaths (doi:10.7910/DVN/A12ADQ)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Document Description

Citation

Title:

Continent Summary Reproduction Number (R) Based on Reported Deaths

Identification Number:

doi:10.7910/DVN/A12ADQ

Distributor:

Harvard Dataverse

Date of Distribution:

2020-10-23

Version:

113

Bibliographic Citation:

Abbott, Sam; Bennett, Christopher; Hickson, Joe; Allen, Jamie; Sherratt, Katharine; Funk, Sebastian, 2020, "Continent Summary Reproduction Number (R) Based on Reported Deaths", https://doi.org/10.7910/DVN/A12ADQ, Harvard Dataverse, V113, UNF:6:iaBAxKNyVsJFt/jfVu3Vfw== [fileUNF]

Study Description

Citation

Title:

Continent Summary Reproduction Number (R) Based on Reported Deaths

Identification Number:

doi:10.7910/DVN/A12ADQ

Authoring Entity:

Abbott, Sam (Centre for the Mathematical Modelling of Infectious Diseases, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, UK)

Bennett, Christopher (Met Office, Exeter, UK)

Hickson, Joe (Met Office, Exeter, UK)

Allen, Jamie (Met Office, Exeter, UK)

Sherratt, Katharine (Centre for the Mathematical Modelling of Infectious Diseases, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, UK)

Funk, Sebastian (Centre for the Mathematical Modelling of Infectious Diseases, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, UK)

Date of Production:

2022-03-24

Software used in Production:

covidrtestimates

Software used in Production:

EpiNow2

Distributor:

Harvard Dataverse

Access Authority:

Abbott, Sam

Holdings Information:

https://doi.org/10.7910/DVN/A12ADQ

Study Scope

Keywords:

Medicine, Health and Life Sciences, COVID-19, Coronavirus, Pandemic, Reproduction Number, regional-deaths

Abstract:

Identifying changes in the reproduction number, rate of spread, and doubling time during the course of the COVID-19 outbreak whilst accounting for potential biases due to delays in case reporting both nationally and subnationally. These results are impacted by changes in testing effort, increases and decreases in testing effort will increase and decrease reproduction number estimates respectively.

Geographic Coverage:

Africa, Americas, Asia, Europe, Global, Oceania

Geographic Unit(s):

continent

Methodology and Processing

Sources Statement

Data Access

Notes:

<a href="http://creativecommons.org/publicdomain/zero/1.0">CC0 1.0</a>

Other Study Description Materials

File Description--f6152965

File: cases_by_infection.tab

  • Number of cases: 762

  • No. of variables per record: 13

  • Type of File: text/tab-separated-values

Notes:

UNF:6:iHnpx6GlJZMe1/Kg/9h2KQ==

File Description--f6152974

File: rt.tab

  • Number of cases: 762

  • No. of variables per record: 13

  • Type of File: text/tab-separated-values

Notes:

UNF:6:daMr0ixkilTu6VEo4Gh0OA==

Variable Description

List of Variables:

Variables

region

f6152965 Location:

Variable Format: character

Notes: UNF:6:IfWAjjlC70LvV1XF36ot0g==

date

f6152965 Location:

Variable Format: character

Notes: UNF:6:ynsbXsHUxDVeHvlZ1OKebg==

strat

f6152965 Location:

Summary Statistics: Mean NaN; StDev NaN; Valid 0.0; Min. NaN; Max. NaN;

Variable Format: numeric

Notes: UNF:6:cfT7yTEd6QWIvYUrWmSVcw==

type

f6152965 Location:

Variable Format: character

Notes: UNF:6:5dAGCsuOCCfu/DbH5TPvAA==

median

f6152965 Location:

Summary Statistics: Valid 762.0; Min. 7.1; Mean 2.1702314183254585E8; StDev 3.559353330662217E9; Max. 8.65806520441E10

Variable Format: numeric

Notes: UNF:6:TAY654BeFt8tCZ7NMOYUOg==

mean

f6152965 Location:

Summary Statistics: Mean 2.3339402796879917E10; StDev 4.5303922380371484E11; Max. 1.17850944174246E13; Min. 7.1; Valid 762.0;

Variable Format: numeric

Notes: UNF:6:hvjqf/CXHoYqrJzhf99SHw==

sd

f6152965 Location:

Summary Statistics: Max. 3.89955770808954E13; Min. 1.2; Mean 7.584566988866371E10; Valid 762.0; StDev 1.4920271383715667E12

Variable Format: numeric

Notes: UNF:6:8/V4YWWN27Q+cvhiQJDP0A==

lower_90

f6152965 Location:

Summary Statistics: Min. 0.3; StDev 1339032.7867990022; Max. 2.60848223E7; Valid 762.0; Mean 120485.76010498696

Variable Format: numeric

Notes: UNF:6:WPwnmis+stgZRud4EPpn/g==

lower_50

f6152965 Location:

Summary Statistics: Min. 3.2; Mean 9234679.897112882; Max. 3.0388846878E9; Valid 762.0; StDev 1.3349718097710177E8;

Variable Format: numeric

Notes: UNF:6:bi332jCxqB5ni+9rKLQXSg==

lower_20

f6152965 Location:

Summary Statistics: Mean 6.797777018792656E7; StDev 1.067061572154613E9; Valid 762.0; Max. 2.53742411739E10; Min. 6.8;

Variable Format: numeric

Notes: UNF:6:kBGhDeznDGOtXddyBd/7rA==

upper_20

f6152965 Location:

Summary Statistics: Mean 7.593355402145679E8; Max. 3.171012974222E11; Valid 762.0; Min. 7.4; StDev 1.2876969387912502E10

Variable Format: numeric

Notes: UNF:6:MvdSF9zXmFGphWzBofZy0g==

upper_50

f6152965 Location:

Summary Statistics: Max. 2.5641555058682E12; Valid 762.0; Min. 7.9; StDev 1.0134467159292491E11; Mean 5.6184450490916E9

Variable Format: numeric

Notes: UNF:6:0C0R3mDmtcauPEuCf9nXgQ==

upper_90

f6152965 Location:

Summary Statistics: Max. 6.96979227507138E13; Mean 1.3812931077951944E11; StDev 2.679897027618779E12; Min. 9.2; Valid 762.0

Variable Format: numeric

Notes: UNF:6:/PMimJgKShHa2bgUyeOJsw==

region

f6152974 Location:

Variable Format: character

Notes: UNF:6:IfWAjjlC70LvV1XF36ot0g==

date

f6152974 Location:

Variable Format: character

Notes: UNF:6:ynsbXsHUxDVeHvlZ1OKebg==

strat

f6152974 Location:

Summary Statistics: Min. NaN; Valid 0.0; StDev NaN; Mean NaN; Max. NaN;

Variable Format: numeric

Notes: UNF:6:cfT7yTEd6QWIvYUrWmSVcw==

type

f6152974 Location:

Variable Format: character

Notes: UNF:6:5dAGCsuOCCfu/DbH5TPvAA==

median

f6152974 Location:

Summary Statistics: Max. 5.45047425193642; Mean 1.1619191982327302; Valid 762.0; Min. 0.598090580039708; StDev 0.7343345907448706

Variable Format: numeric

Notes: UNF:6:fE+lF5Mc0XsbKtRpdCNdmA==

mean

f6152974 Location:

Summary Statistics: StDev 0.7768843064409557; Min. 0.605611093459187; Valid 762.0; Max. 5.65084162713786; Mean 1.183790491321614

Variable Format: numeric

Notes: UNF:6:rvAm1Gv6bf+Q620184u9ZQ==

sd

f6152974 Location:

Summary Statistics: StDev 0.3926113680940596; Min. 0.00956431656156107; Mean 0.17956328180402928; Max. 1.99784409981404; Valid 762.0;

Variable Format: numeric

Notes: UNF:6:2IzOKhZr3o8MBoaMXa7kHg==

lower_90

f6152974 Location:

Summary Statistics: Valid 762.0; Min. 0.450065306494784; Max. 2.6048263300874; StDev 0.34323138016222937; Mean 0.9358426781739986

Variable Format: numeric

Notes: UNF:6:dwaLp0ICzhTKNiSp+NMVTQ==

lower_50

f6152974 Location:

Summary Statistics: Min. 0.53622118936153; StDev 0.5345405400033187; Mean 1.0551956918506544; Max. 4.10731368495234; Valid 762.0;

Variable Format: numeric

Notes: UNF:6:4KBVV3gZtLvMX3Ej3EK3Tg==

lower_20

f6152974 Location:

Summary Statistics: StDev 0.6537589471022793; Mean 1.1201904797522482; Valid 762.0; Min. 0.5729380107196; Max. 4.9331613596307

Variable Format: numeric

Notes: UNF:6:wymyvBPf1P4WQe7YcadHpw==

upper_20

f6152974 Location:

Summary Statistics: Valid 762.0; Max. 6.02838047939845; StDev 0.8270114789772423; Mean 1.2070988589326068; Min. 0.62405610144452;

Variable Format: numeric

Notes: UNF:6:tAaKi6HYJaW/ODyr+z04cw==

upper_50

f6152974 Location:

Summary Statistics: StDev 1.010407120305277; Valid 762.0; Mean 1.290156492292801; Min. 0.6775359182695; Max. 7.13023861418363

Variable Format: numeric

Notes: UNF:6:A4znxwtXzHacMSho2NS4Ag==

upper_90

f6152974 Location:

Summary Statistics: Valid 762.0; StDev 1.4455486980606742; Mean 1.5036302262563812; Min. 0.764025533608988; Max. 9.10896372148285;

Variable Format: numeric

Notes: UNF:6:wR+p6+DjYnebEcBYXPLREQ==

Other Study-Related Materials

Label:

high_reported_cases_plot.png

Text:

Notes:

image/png

Other Study-Related Materials

Label:

high_rt_plot.png

Text:

Notes:

image/png

Other Study-Related Materials

Label:

summary_plot.png

Text:

Notes:

image/png