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Part 1: Document Description
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Citation |
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Title: |
Replication Data for: Antibody responses to crude gametocyte extract predicts P. falciparum gametocyte carriage in Kenya |
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Identification Number: |
doi:10.7910/DVN/AUNDEV |
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Distributor: |
Harvard Dataverse |
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Date of Distribution: |
2020-09-23 |
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Version: |
1 |
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Bibliographic Citation: |
Omondi, Brian R.; Muthui, Michelle K.; Muasya, William I.; Orindi, Benedict; Mwakubambanya, Ramadhan S.; Bousema, Teun; Drakeley, Chris; Marsh, Kevin; Bejon, Philip; Kapulu, Melissa C., 2020, "Replication Data for: Antibody responses to crude gametocyte extract predicts P. falciparum gametocyte carriage in Kenya", https://doi.org/10.7910/DVN/AUNDEV, Harvard Dataverse, V1, UNF:6:aeC1vJvoAuJvX/RPQrUrDg== [fileUNF] |
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Citation |
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Title: |
Replication Data for: Antibody responses to crude gametocyte extract predicts P. falciparum gametocyte carriage in Kenya |
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Identification Number: |
doi:10.7910/DVN/AUNDEV |
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Authoring Entity: |
Omondi, Brian R. (Department of Biosciences, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Muthui, Michelle K. (Department of Biosciences, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Department of Biochemistry and Molecular Biology, Egerton University, Nakuru, Kenya) |
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Muasya, William I. (Department of Biosciences, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Orindi, Benedict (Department of Biosciences, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Mwakubambanya, Ramadhan S. (Department of Biochemistry and Molecular Biology, Egerton University, Nakuru, Kenya) |
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Bousema, Teun (Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, Netherlands) |
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Drakeley, Chris (Department of Infection Biology, London School of Hygiene & Tropical Medicine, London, UK) |
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Marsh, Kevin (Department of Biosciences, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Centre for Tropical Medicine and Global Health, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, UK) |
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Bejon, Philip (Department of Biosciences, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Centre for Tropical Medicine and Global Health, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, UK) |
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Kapulu, Melissa C. (Department of Biosciences, KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Centre for Tropical Medicine and Global Health, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, UK) |
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Grant Number: |
OPP1034789 |
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Grant Number: |
092741 |
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Distributor: |
Harvard Dataverse |
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Access Authority: |
Kapulu, Melissa C. |
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Depositor: |
Omondi, Brian R. |
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Date of Deposit: |
2020-09-22 |
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Holdings Information: |
https://doi.org/10.7910/DVN/AUNDEV |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences |
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Abstract: |
<p>This is a replication dataset for the submitted manuscript titled "<a href="">Antibody responses to crude gametocyte extract predicts P. falciparum gametocyte carriage in Kenya</a>" </p> <p>The dataset constitutes data from two independent cross sectional studies of participants aged 6 months to 67 years. The AFIRM cohort participants were recruited from Junju in Kilifi County and included 413 individuals recruited from January 2014-February 2015. On the other hand, the KMLC cohort included 287 individuals recruited from Junju and Ngerenya in Kilifi County between 1998-2016. Recorded data for each individual includes participant identifier, age, sex, season (AFIRM Cohort) and transmission setting (KMLC Cohort). The parasite density and antibody concentration are provided. </p> |
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Notes: |
<strong>Data Availability</strong> <p>The data are under restricted access, however, are available through the KEMRI-Wellcome Trust Research Programme Data Governance Committee if the use of the data is complaint with the consent provided by the participants. </p> <strong>How to request</strong> <ol> <li>Download and complete the <a href="https://kemri-wellcome.org/wp-content/uploads/2016/02/Data-Sharing-guidelines-External-requests.docx"><strong>data request form</strong></a></li> <li> Email completed data request form to the Data Governance Committee at <a href="mailto:dgc@kemri-wellcome.org?cc=lmwango@kemri-wellcome.org?Subject=Data%20Access%20Request"><strong>dgc@kemri-wellcome.org</strong></a> </li> </ol> |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Citation Requirement: |
<p>Publications based on this data collection should acknowledge this source by means of bibliographic citation.</p> |
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<p>This data is licensed under the <a href="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</a> <a href="https://creativecommons.org/licenses/by/4.0/legalcode"><img src="https://i.creativecommons.org/l/by/3.0/88x31.png"> </a> </p> |
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<p>The data are under restricted access, however, are available through the KEMRI-Wellcome Trust Research Programme Data Governance Committee if the use of the data is complaint with the consent provided by the participants. </p> <strong>How to request</strong> <ol> <li>Download and complete the <a href="https://kemri-wellcome.org/wp-content/uploads/2016/02/Data-Sharing-guidelines-External-requests.docx"><strong>data request form</strong></a></li> <li> Email completed data request form to the Data Governance Committee at <a href="mailto:dgc@kemri-wellcome.org?cc=lmwango@kemri-wellcome.org?Subject=Data%20Access%20Request"><strong>dgc@kemri-wellcome.org</strong></a> </li> </ol> |
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Other Study Description Materials |
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File Description--f4086510 |
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File: afirm_data.tab |
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Notes: |
UNF:6://WKDXMhkGAe57sTfnZOMA== |
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This file contains the assessment of the infectious reservoir of malaria (AFIRM) study dataset including the participants age, season at recruitment, parasite density and antibody responses. The study was conducted between January 2014 - February 2015 and included 413 participants |
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File Description--f4086509 |
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File: afirm_kmlc.tab |
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Notes: |
UNF:6:Mux8st9RPzy0DrFLkXXS7A== |
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This file contains data for the combined cohort analysis for both assessment of the infectious reservoir of malaria (AFIRM) and kilifi malaria longitudinal cohort (KMLC). It contains participants age, parasitaemia, antibody reponses of 687 individuals |
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File Description--f4086508 |
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File: kmlc_data.tab |
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Notes: |
UNF:6:F4zzyaf7+YaqHOfXZ2an3A== |
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This file contains kilifi malaria longitudinal cohort (KMLC) data including participants age, transmission setting, parasite density and antibody responses. The cross-sectional survey was conducted between 1998-2016 and included 274 children aged below 15 years |
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Label: |
afirm_correlation.R |
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Text: |
This file contains the R script used for the correlation and comparison analysis in the afirm cohort |
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Notes: |
type/x-r-syntax |
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Label: |
afirm_kmlc_combined_correlation.R |
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Text: |
This file contains the R script used for the correlation analysis in the combined cohort analysis (afirm and kmlc) |
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Notes: |
type/x-r-syntax |
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Label: |
afirm_kmlc_combined_regression.R |
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Text: |
This file contains the R script used for the logistic regression analysis in the combined cohort (afirm and kmlc) |
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Notes: |
type/x-r-syntax |
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afirm_regression.R |
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Text: |
This file contains the R script used for the logistic regression analysis in the afirm cohort |
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Notes: |
type/x-r-syntax |
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Dataset_Codebook_BROmondi.xlsx |
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Contains variable descriptions and value labels |
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Notes: |
application/vnd.openxmlformats-officedocument.spreadsheetml.sheet |
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Data_Readme_BROmondi.txt |
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Notes: |
text/plain |
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Label: |
kmlc_correlation.R |
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Text: |
This file contains the R script used for the correlation and comparison analysis in the kmlc cohort |
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Notes: |
type/x-r-syntax |
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Label: |
kmlc_regression.R |
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Text: |
This file contains the R script used for the logistic regression analysis in the kmlc cohort |
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Notes: |
type/x-r-syntax |