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Part 1: Document Description
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Citation |
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Title: |
Replication Data for: Infection patterns of endemic human coronaviruses in rural households in coastal Kenya |
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Identification Number: |
doi:10.7910/DVN/CPJ9B4 |
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Distributor: |
Harvard Dataverse |
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Date of Distribution: |
2020-12-08 |
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Version: |
2 |
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Bibliographic Citation: |
Nyaguthii, Dickson Machira; Otieno, Grieven P.; Kombe, Ivy K.; Koech, Dorothy; Mutunga, Martin; Medley, Graham F.; Nokes, David James; Munywoki, Patrick K., 2020, "Replication Data for: Infection patterns of endemic human coronaviruses in rural households in coastal Kenya", https://doi.org/10.7910/DVN/CPJ9B4, Harvard Dataverse, V2 |
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Citation |
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Title: |
Replication Data for: Infection patterns of endemic human coronaviruses in rural households in coastal Kenya |
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Identification Number: |
doi:10.7910/DVN/CPJ9B4 |
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Authoring Entity: |
Nyaguthii, Dickson Machira (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya. P.O. Box 230-80108 Kilifi, Kenya; Department of Veterinary Public Health, Pharmacology and Toxicology, Faculty of Veterinary Medicine and Surgery, Egerton University) |
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Otieno, Grieven P. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya. P.O. Box 230-80108 Kilifi, Kenya) |
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Kombe, Ivy K. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya. P.O. Box 230-80108 Kilifi, Kenya) |
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Koech, Dorothy (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya. P.O. Box 230-80108 Kilifi, Kenya) |
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Mutunga, Martin (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya. P.O. Box 230-80108 Kilifi, Kenya) |
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Medley, Graham F. (Centre for Mathematical Modelling of Infectious Disease, London School of Hygiene and Tropical Medicine, London, WC1H 9SH, United Kingdom) |
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Nokes, David James (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya. P.O. Box 230-80108 Kilifi, Kenya; School of Life Sciences and Zeeman Institute for Systems Biology and Infectious Disease Epidemiology Research (SBIDER), University of Warwick, Coventry, CV4 7AL, United Kingdom) |
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Munywoki, Patrick K. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya. P.O. Box 230-80108 Kilifi, Kenya) |
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Distributor: |
Harvard Dataverse |
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Access Authority: |
Otieno, Grieven Paul |
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Access Authority: |
Munywoki, Patrick K. |
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Access Authority: |
Nokes, David James |
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Access Authority: |
The Data Governance Committee |
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Depositor: |
Otieno, Grieven P. |
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Date of Deposit: |
2020-12-08 |
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Holdings Information: |
https://doi.org/10.7910/DVN/CPJ9B4 |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences |
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Abstract: |
<p> This is a replication dataset for the manuscript "<a href="">Infection patterns of endemic human coronaviruses in rural households in coastal Kenya</a>" submitted to Wellcome Open Research journal. </p> <p>This dataset is part from a cohort study conducted in rural coastal Kenya between December 2009 and June 2020. The study recruited 47 households, each with an infant, containing 483 members. nasopharyngeal samples were taken from study participants every 3-4 days and screened for 3 hCoVs (OC43, NL63 and 229E) and several other respiratory viral pathogens using real-time polymerase chain reaction (RT-PCR). </p> |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Citation Requirement: |
<p>Publications based on this data collection should acknowledge this source by means of bibliographic citation.</p> |
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Notes: |
<p>This data is licensed under the <a href="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</a> <a href="https://creativecommons.org/licenses/by/4.0/legalcode"><img src="https://i.creativecommons.org/l/by/3.0/88x31.png"> </a> </p> <p>For more information on these data, please contact the author via Grieven P. Otieno [grievenoti@gmail.com],Patrick Munywoki [pmunywoki@gmail.com], D. James Nokes [JNokes@kemri-wellcome.org] or the data governance office via this email address: dgc@kemri-wellcome.org.</p> |
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Other Study Description Materials |
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Related Publications |
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Citation |
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Title: |
Munywoki PK, Koech DC, Agoti CN, Cane PA, Medley GF, Nokes DJ. Continuous Invasion by Respiratory Viruses Observed in Rural Households During a Respiratory Syncytial Virus Seasonal Outbreak in Coastal Kenya. Clin Infect Dis Off Publ Infect Dis Soc Am. 2018; 67(10):1559–1567 |
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Identification Number: |
10.1093/cid/ciy313 |
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Bibliographic Citation: |
Munywoki PK, Koech DC, Agoti CN, Cane PA, Medley GF, Nokes DJ. Continuous Invasion by Respiratory Viruses Observed in Rural Households During a Respiratory Syncytial Virus Seasonal Outbreak in Coastal Kenya. Clin Infect Dis Off Publ Infect Dis Soc Am. 2018; 67(10):1559–1567 |
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Citation |
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Title: |
Munywoki PK, Koech DC, Agoti CN, et al. The Source of Respiratory Syncytial Virus Infection In Infants: A Household Cohort Study In Rural Kenya. J Infect Dis. 2014; 209(11):1685–1692. |
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Identification Number: |
10.1093/infdis/jit828 |
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Bibliographic Citation: |
Munywoki PK, Koech DC, Agoti CN, et al. The Source of Respiratory Syncytial Virus Infection In Infants: A Household Cohort Study In Rural Kenya. J Infect Dis. 2014; 209(11):1685–1692. |
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Citation |
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Title: |
Munywoki PK, Koech DC, Agoti CN, et al. Influence of age, severity of infection, and co-infection on the duration of respiratory syncytial virus (RSV) shedding. Epidemiol Infect. 2015; 143(4):804–812. |
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Identification Number: |
10.1017/S0950268814001393 |
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Bibliographic Citation: |
Munywoki PK, Koech DC, Agoti CN, et al. Influence of age, severity of infection, and co-infection on the duration of respiratory syncytial virus (RSV) shedding. Epidemiol Infect. 2015; 143(4):804–812. |
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Label: |
GPOtieno_hCoV_WAIFW_codebook.pdf |
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Text: |
Contains variable descriptions and value labels |
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Notes: |
application/pdf |
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Label: |
GPOtieno_HCoV_WAIFW_data.zip |
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Text: |
Analysis datasets (STATA v13.1) |
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Notes: |
application/zip |
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Label: |
GPOtieno_HCoV_WAIFW_Readme.txt |
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Text: |
Contains data description, file listing and terms of use |
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Notes: |
text/plain |
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Label: |
GPOtieno_HCoV_WAIFW_scripts.zip |
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Text: |
Analysis code (STATA v13.1) |
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Notes: |
application/zip |
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Label: |
Supplementary Tables and figures.pdf |
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Notes: |
application/pdf |