RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (312K, 39°C, 100 ns) , seed #2 (doi:10.7910/DVN/E0CO7J)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
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RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (312K, 39°C, 100 ns) , seed #2

doi:10.7910/DVN/E0CO7J

Harvard Dataverse

2025-03-11

1

PCD, Thermo, 2025, "RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (312K, 39°C, 100 ns) , seed #2", https://doi.org/10.7910/DVN/E0CO7J, Harvard Dataverse, V1, UNF:6:u0fqZF6kaiZvFXA1UEh1/g== [fileUNF]

RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (312K, 39°C, 100 ns) , seed #2

doi:10.7910/DVN/E0CO7J

PCD, Thermo (Chonnam National University)

Harvard Dataverse

PCD, Thermo

PCD, Thermo

2025-03-11

https://doi.org/10.7910/DVN/E0CO7J

Computer and Information Science, JUNV surface glycoprotein receptor-binding subunit (GP1)

RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (312K, 39°C, 100 ns) , seed #2.

• Number of cases: 10001

• No. of variables per record: 3

• Type of File: text/tab-separated-values

UNF:6:VhEjurMPr8vGjdBog8fasg==

• Number of cases: 577

• No. of variables per record: 3

• Type of File: text/tab-separated-values

UNF:6:Sr85TtvQpYUDbXoBOseX9A==

• Number of cases: 10001

• No. of variables per record: 5

• Type of File: text/tab-separated-values

UNF:6:xO6RzfitV628QGIg5GHOYw==

• Number of cases: 10001

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:QKo/yDfuYel+BTCd2+VyZQ==

• Number of cases: 576

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:mw8j1AEsIaFCiJhUIjC/rg==

• Number of cases: 10001

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:XMGKIWDBDtxKCnvSJY2URw==

• Time (ps) - Time (ps)
• Hydrogen bonds - Hydrogen bonds
• Pairs within 0.35 nm - Pairs within 0.35 nm
• Time (ps) - Time (ps)
• Average (nm\S2\N) - Average (nm\S2\N)
• Standard deviation (nm\S2\N) - Standard deviation (nm\S2\N)
• Time (ps) - Time (ps)
• Rg - Rg
• Rg\sX\N - Rg\sX\N
• Rg\sY\N - Rg\sY\N
• Rg\sZ\N - Rg\sZ\N
• Time (ps) - Time (ps)
• fter lsq fit to Protein - fter lsq fit to Protein
• 1 - 1
• 0.2670 - 0.2670
• Time (ps) - Time (ps)
• Total - Total

f10979447 Location:

Summary Statistics: Mean 49.99999999999999; Max. 100.0; Valid 10001.0; StDev 28.871843550421236; Min. 0.0

Variable Format: numeric

Notes: UNF:6:Xd0BNWL8q82nJpopTOPPCw==

f10979447 Location:

Summary Statistics: Min. 6.0; StDev 1.7251303059602778; Mean 12.46325367463253; Valid 10001.0; Max. 20.0

Variable Format: numeric

Notes: UNF:6:ubYhAKLJMNS7gpNrfnv1LA==

f10979447 Location:

Summary Statistics: Min. 0.0; Mean 5.569443055694438; Max. 17.0; Valid 10001.0; StDev 2.2766647051732765

Variable Format: numeric

Notes: UNF:6:vS6bZvOfpBGYJbbm2cv6TQ==

f10979478 Location:

Summary Statistics: Max. 577.0; Min. 1.0; StDev 166.70982774469738; Valid 577.0; Mean 289.0

Variable Format: numeric

Notes: UNF:6:PsvLRC9ISfmMExjkyzM3tg==

f10979478 Location:

Summary Statistics: Mean 0.4812738301559792; Min. 0.0; StDev 0.4553885298086804; Valid 577.0; Max. 2.403

Variable Format: numeric

Notes: UNF:6:LNS1gn/gPNK6ljLC4Rpzhg==

f10979478 Location:

Summary Statistics: Min. 0.0; Max. 0.45; Mean 0.10549393414211439; StDev 0.06976272072335492; Valid 577.0

Variable Format: numeric

Notes: UNF:6:jgfE0OZtYWi3QSoJTodq2A==

f10979481 Location:

Summary Statistics: Min. 0.0; Mean 50000.0; Max. 100000.0; Valid 10001.0; StDev 28871.843550421232;

Variable Format: numeric

Notes: UNF:6:yng+oh+Vq/c2RVgjFBvZ7g==

f10979481 Location:

Summary Statistics: Min. 2.98776; Valid 10001.0; Mean 3.0805092710728927; Max. 3.16451; StDev 0.024336104862911278;

Variable Format: numeric

Notes: UNF:6:dn/wiSuMGqN+wfMtDcvYpQ==

f10979481 Location:

Summary Statistics: Min. 1.4485; Mean 2.125488807119288; StDev 0.3792028681051704; Max. 2.78858; Valid 10001.0

Variable Format: numeric

Notes: UNF:6:6lc5m0Axcd3ghqfW0tahZA==

f10979481 Location:

Summary Statistics: Max. 2.97477; Mean 2.625403738626137; StDev 0.34594260775873076; Min. 1.63425; Valid 10001.0

Variable Format: numeric

Notes: UNF:6:XuBTK2GYZqWHMsVp4aNAxg==

f10979481 Location:

Summary Statistics: Mean 2.6917101549845017; Min. 1.84561; Max. 3.00043; StDev 0.24712190127171257; Valid 10001.0;

Variable Format: numeric

Notes: UNF:6:wuzO+iNU90gjiex7lThHFQ==

f10979445 Location:

Summary Statistics: Min. 0.0; Max. 100.0000076; Mean 50.00000236995278; Valid 10001.0; StDev 28.87184491731381;

Variable Format: numeric

Notes: UNF:6:o8DlsKAspsa1vrbsM5xrhw==

f10979445 Location:

Summary Statistics: Min. 4.994E-4; Max. 0.6573586; Mean 0.3225175885311468; StDev 0.08755478522944574; Valid 10001.0;

Variable Format: numeric

Notes: UNF:6:O16292W6+dXVy3YSHgBAaA==

f10979485 Location:

Summary Statistics: Mean 289.5; Min. 2.0; StDev 166.42115250171776; Valid 576.0; Max. 577.0

Variable Format: numeric

Notes: UNF:6:iMJtm0c7VE5xhQMzN6cCig==

f10979485 Location:

Summary Statistics: Valid 576.0; Min. 0.0674; Max. 0.5693; StDev 0.06706597746408055; Mean 0.16927256944444444;

Variable Format: numeric

Notes: UNF:6:3APbkKcwo+ejANjAeNwa9Q==

f10979456 Location:

Summary Statistics: Min. 0.0; Mean 50000.0; Max. 100000.0; StDev 28871.843550421232; Valid 10001.0

Variable Format: numeric

Notes: UNF:6:yng+oh+Vq/c2RVgjFBvZ7g==

f10979456 Location:

Summary Statistics: Min. 262.09; Mean 277.69355364463553; StDev 3.1279151393135582; Valid 10001.0; Max. 289.683

Variable Format: numeric

Notes: UNF:6:N8DeGRiUPQQbOpSsCjwizA==

Label:

5en2-312k-0ns.pdb

application/vnd.palm

Label:

5en2-312k-100ns.pdb

application/vnd.palm

Label:

5en2-312k-50ns.pdb

application/vnd.palm

Label:

5en2-m.pdb

application/vnd.palm

Label:

5en2-part2-312k-hbond.xvg

application/octet-stream

Label:

5en2-part2-312k-res-sasa.xvg

application/octet-stream

Label:

5en2-part2-312k-rg.xvg

application/octet-stream

Label:

5en2-part2-312k-rmsd.xvg

application/octet-stream

Label:

5en2-part2-312k-rmsf.xvg

application/octet-stream

Label:

5en2-part2-312k-sasa.xvg

application/octet-stream

Label:

complex.gro

application/octet-stream

Label:

dynamic-nopbc.xtc

application/octet-stream

Label:

em.edr

application/octet-stream

Label:

em.gro

application/octet-stream

Label:

em.log

text/plain

Label:

em.mdp

application/octet-stream

Label:

em.tpr

application/octet-stream

Label:

em.trr

application/octet-stream

Label:

index.ndx

application/octet-stream

Label:

ions.mdp

application/octet-stream

Label:

ions.tpr

application/octet-stream

Label:

md.mdp

application/octet-stream

Label:

mdout.mdp

application/octet-stream

Label:

md_0_10.cpt

application/mac-compactpro

Label:

md_0_10.edr

application/octet-stream

Label:

md_0_10.gro

application/octet-stream

Label:

md_0_10.log

text/plain

Label:

md_0_10.tpr

application/octet-stream

Label:

md_0_10_prev.cpt

application/mac-compactpro

Label:

newbox.gro

application/octet-stream

Label:

npt.cpt

application/mac-compactpro

Label:

npt.edr

application/octet-stream

Label:

npt.gro

application/octet-stream

Label:

npt.log

text/plain

Label:

npt.mdp

application/octet-stream

Label:

npt.tpr

application/octet-stream

Label:

npt.trr

application/octet-stream

Label:

nvt.cpt

application/mac-compactpro

Label:

nvt.edr

application/octet-stream

Label:

nvt.gro

application/octet-stream

Label:

nvt.log

text/plain

Label:

nvt.mdp

application/octet-stream

Label:

nvt.tpr

application/octet-stream

Label:

nvt.trr

application/octet-stream

Label:

posre_Protein_chain_A.itp

application/vnd.shana.informed.formtemplate

Label:

posre_Protein_chain_B.itp

application/vnd.shana.informed.formtemplate

Label:

posre_Protein_chain_C.itp

application/vnd.shana.informed.formtemplate

Label:

solv.gro

application/octet-stream

Label:

solv_ions.gro

application/octet-stream

Label:

topol.top

application/octet-stream

Label:

topol.top.1

application/octet-stream

Label:

topol.top.2

application/octet-stream

Label:

topol_Protein_chain_A.itp

application/vnd.shana.informed.formtemplate

Label:

topol_Protein_chain_B.itp

application/vnd.shana.informed.formtemplate

Label:

topol_Protein_chain_C.itp

application/vnd.shana.informed.formtemplate

Label:

xvg2csv.py

text/x-python