RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (310K, 37°C, 100 ns) , seed #2 (doi:10.7910/DVN/E0ORTX)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
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RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (310K, 37°C, 100 ns) , seed #2

doi:10.7910/DVN/E0ORTX

Harvard Dataverse

2025-03-11

1

PCD, Thermo, 2025, "RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (310K, 37°C, 100 ns) , seed #2", https://doi.org/10.7910/DVN/E0ORTX, Harvard Dataverse, V1, UNF:6:wBPPd7BfdvxIVkMbSQxMGw== [fileUNF]

RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (310K, 37°C, 100 ns) , seed #2

doi:10.7910/DVN/E0ORTX

PCD, Thermo (Chonnam National University)

Harvard Dataverse

PCD, Thermo

PCD, Thermo

2025-03-11

https://doi.org/10.7910/DVN/E0ORTX

Computer and Information Science, JUNV surface glycoprotein receptor-binding subunit (GP1)

RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (310K, 37°C, 100 ns) , seed #2.

• Number of cases: 10001

• No. of variables per record: 3

• Type of File: text/tab-separated-values

UNF:6:RT1LUDplkymD/h8DRw8BQg==

• Number of cases: 577

• No. of variables per record: 3

• Type of File: text/tab-separated-values

UNF:6:IWsMZS5jNTlLgRnqWfJA7w==

• Number of cases: 10001

• No. of variables per record: 5

• Type of File: text/tab-separated-values

UNF:6:63RG1P8vEfaWK1COAhssLw==

• Number of cases: 10001

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:+rEnfef6fPb8hPGnAsLeRA==

• Number of cases: 576

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:oNN421FMRF7xDVFRXrxQeA==

• Number of cases: 10001

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:/rrfwvxl9YVfSfENlqWySQ==

• Time (ps) - Time (ps)
• Hydrogen bonds - Hydrogen bonds
• Pairs within 0.35 nm - Pairs within 0.35 nm
• Time (ps) - Time (ps)
• Average (nm\S2\N) - Average (nm\S2\N)
• Standard deviation (nm\S2\N) - Standard deviation (nm\S2\N)
• Time (ps) - Time (ps)
• Rg - Rg
• Rg\sX\N - Rg\sX\N
• Rg\sY\N - Rg\sY\N
• Rg\sZ\N - Rg\sZ\N
• Time (ps) - Time (ps)
• fter lsq fit to Protein - fter lsq fit to Protein
• 1 - 1
• 0.3122 - 0.3122
• Time (ps) - Time (ps)
• Total - Total

f10979316 Location:

Summary Statistics: Mean 49.99999999999999; StDev 28.871843550421236; Max. 100.0; Valid 10001.0; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:Xd0BNWL8q82nJpopTOPPCw==

f10979316 Location:

Summary Statistics: Mean 8.634336566343377; Min. 3.0; Valid 10001.0; StDev 1.9101248342221522; Max. 18.0

Variable Format: numeric

Notes: UNF:6:YPfQN6ZHzVzrVZ4BG6c/jw==

f10979316 Location:

Summary Statistics: Max. 14.0; Min. 0.0; StDev 2.153994923528593; Valid 10001.0; Mean 4.611038896110394

Variable Format: numeric

Notes: UNF:6:uwycdvS1M02CbJ5eGVmgTQ==

f10979329 Location:

Summary Statistics: StDev 166.70982774469738; Valid 577.0; Min. 1.0; Mean 289.0; Max. 577.0;

Variable Format: numeric

Notes: UNF:6:PsvLRC9ISfmMExjkyzM3tg==

f10979329 Location:

Summary Statistics: StDev 0.4595530488614885; Mean 0.48659792027729637; Min. 0.0; Valid 577.0; Max. 2.426;

Variable Format: numeric

Notes: UNF:6:9AtNavqRUq3zhJUJ+aY7mg==

f10979329 Location:

Summary Statistics: Min. 0.001; Valid 577.0; Mean 0.10383015597920277; Max. 0.453; StDev 0.0663565097085794

Variable Format: numeric

Notes: UNF:6:LUDyRjfxWsV3MSLJzJEUaQ==

f10979362 Location:

Summary Statistics: Mean 50000.0; Min. 0.0; StDev 28871.843550421232; Max. 100000.0; Valid 10001.0

Variable Format: numeric

Notes: UNF:6:yng+oh+Vq/c2RVgjFBvZ7g==

f10979362 Location:

Summary Statistics: Mean 3.0737889461053896; Valid 10001.0; Max. 3.16233; StDev 0.022303416525034793; Min. 2.99211;

Variable Format: numeric

Notes: UNF:6:C93j2b1Xkf0N0tFqeG1wGQ==

f10979362 Location:

Summary Statistics: Valid 10001.0; StDev 0.3579626264078585; Min. 1.70936; Mean 2.5789251734826513; Max. 3.0203

Variable Format: numeric

Notes: UNF:6:2/xsf1ixV8aIzhXDKK96pA==

f10979362 Location:

Summary Statistics: Mean 2.6567589881011893; StDev 0.320169060024007; Max. 2.98226; Min. 1.82609; Valid 10001.0

Variable Format: numeric

Notes: UNF:6:d9tfc1wUfqLoOVTTNdTmcQ==

f10979362 Location:

Summary Statistics: Min. 1.43464; StDev 0.5029533835329785; Max. 2.95985; Mean 2.169001899810019; Valid 10001.0;

Variable Format: numeric

Notes: UNF:6:zc/lwaqGl/Q4F8p+rifaXg==

f10979315 Location:

Summary Statistics: StDev 28.87184491731381; Valid 10001.0; Max. 100.0000076; Mean 50.00000236995278; Min. 0.0

Variable Format: numeric

Notes: UNF:6:o8DlsKAspsa1vrbsM5xrhw==

f10979315 Location:

Summary Statistics: Max. 0.552233; StDev 0.06929063813338493; Min. 5.025E-4; Valid 10001.0; Mean 0.3689421415458454

Variable Format: numeric

Notes: UNF:6:gZZGMOM4+xxUaBuGW0adVQ==

f10979337 Location:

Summary Statistics: StDev 166.42115250171776; Mean 289.5; Max. 577.0; Valid 576.0; Min. 2.0

Variable Format: numeric

Notes: UNF:6:iMJtm0c7VE5xhQMzN6cCig==

f10979337 Location:

Summary Statistics: Max. 0.4395; Min. 0.0675; Valid 576.0; StDev 0.05624431431892935; Mean 0.16065989583333334

Variable Format: numeric

Notes: UNF:6:ZzFhB36iR6gDSG7GWywnLA==

f10979340 Location:

Summary Statistics: Max. 100000.0; Valid 10001.0; Mean 50000.0; StDev 28871.843550421232; Min. 0.0

Variable Format: numeric

Notes: UNF:6:yng+oh+Vq/c2RVgjFBvZ7g==

f10979340 Location:

Summary Statistics: Min. 257.702; Max. 294.548; Valid 10001.0; StDev 3.3301338347151175; Mean 280.76381701829814;

Variable Format: numeric

Notes: UNF:6:zvAlBEb65fsxIOQIFJtxTg==

Label:

5en2-310k-0ns.pdb

application/vnd.palm

Label:

5en2-310k-100ns.pdb

application/vnd.palm

Label:

5en2-310k-50ns.pdb

application/vnd.palm

Label:

5en2-m.pdb

application/vnd.palm

Label:

5en2-part2-310k-hbond.xvg

application/octet-stream

Label:

5en2-part2-310k-res-sasa.xvg

application/octet-stream

Label:

5en2-part2-310k-rg.xvg

application/octet-stream

Label:

5en2-part2-310k-rmsd.xvg

application/octet-stream

Label:

5en2-part2-310k-rmsf.xvg

application/octet-stream

Label:

5en2-part2-310k-sasa.xvg

application/octet-stream

Label:

complex.gro

application/octet-stream

Label:

dynamic-nopbc.xtc

application/octet-stream

Label:

em.edr

application/octet-stream

Label:

em.gro

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em.log

text/plain

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em.mdp

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Label:

em.tpr

application/octet-stream

Label:

em.trr

application/octet-stream

Label:

ie.mdp

application/octet-stream

Label:

index.ndx

application/octet-stream

Label:

ions.mdp

application/octet-stream

Label:

ions.tpr

application/octet-stream

Label:

md.mdp

application/octet-stream

Label:

mdout.mdp

application/octet-stream

Label:

md_0_10.cpt

application/mac-compactpro

Label:

md_0_10.edr

application/octet-stream

Label:

md_0_10.gro

application/octet-stream

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md_0_10.log

text/plain

Label:

md_0_10.tpr

application/octet-stream

Label:

md_0_10_prev.cpt

application/mac-compactpro

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newbox.gro

application/octet-stream

Label:

npt.cpt

application/mac-compactpro

Label:

npt.edr

application/octet-stream

Label:

npt.gro

application/octet-stream

Label:

npt.log

text/plain

Label:

npt.mdp

application/octet-stream

Label:

npt.tpr

application/octet-stream

Label:

npt.trr

application/octet-stream

Label:

nvt.cpt

application/mac-compactpro

Label:

nvt.edr

application/octet-stream

Label:

nvt.gro

application/octet-stream

Label:

nvt.log

text/plain

Label:

nvt.mdp

application/octet-stream

Label:

nvt.tpr

application/octet-stream

Label:

nvt.trr

application/octet-stream

Label:

posre_Protein_chain_A.itp

application/vnd.shana.informed.formtemplate

Label:

posre_Protein_chain_B.itp

application/vnd.shana.informed.formtemplate

Label:

posre_Protein_chain_C.itp

application/vnd.shana.informed.formtemplate

Label:

solv.gro

application/octet-stream

Label:

solv_ions.gro

application/octet-stream

Label:

topol.top

application/octet-stream

Label:

topol.top.1

application/octet-stream

Label:

topol.top.2

application/octet-stream

Label:

topol_Protein_chain_A.itp

application/vnd.shana.informed.formtemplate

Label:

topol_Protein_chain_B.itp

application/vnd.shana.informed.formtemplate

Label:

topol_Protein_chain_C.itp

application/vnd.shana.informed.formtemplate

Label:

xvg2csv.py

text/x-python