5X8M, anti-PD-L1 antibody, Durvalumab (310K, 37C, 500 ns), random seed #1: RMSD, RMSF, Rg, SASA (doi:10.7910/DVN/G3HIWN)

View:

Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Document Description
Citation
Title:	5X8M, anti-PD-L1 antibody, Durvalumab (310K, 37C, 500 ns), random seed #1: RMSD, RMSF, Rg, SASA
Identification Number:	doi:10.7910/DVN/G3HIWN
Distributor:	Harvard Dataverse
Date of Distribution:	2025-03-11
Version:	1
Bibliographic Citation:	PCD, Thermo, 2025, "5X8M, anti-PD-L1 antibody, Durvalumab (310K, 37C, 500 ns), random seed #1: RMSD, RMSF, Rg, SASA", https://doi.org/10.7910/DVN/G3HIWN, Harvard Dataverse, V1, UNF:6:+p6iH39sOLvooEiR6u1q7g== [fileUNF]
Study Description
Citation
Title:	5X8M, anti-PD-L1 antibody, Durvalumab (310K, 37C, 500 ns), random seed #1: RMSD, RMSF, Rg, SASA
Identification Number:	doi:10.7910/DVN/G3HIWN
Authoring Entity:	PCD, Thermo (Chonnam National University)
Distributor:	Harvard Dataverse
Access Authority:	PCD, Thermo
Depositor:	PCD, Thermo
Date of Deposit:	2025-03-11
Holdings Information:	https://doi.org/10.7910/DVN/G3HIWN
Study Scope
Keywords:	Computer and Information Science, PD-L1, durvalumab
Abstract:	5X8M, anti-PD-L1 antibody, Durvalumab (310K, 37C, 500 ns), random seed #1: RMSD, RMSF, Rg, SASA. PDBs obtained every 50 ns.
Methodology and Processing
Sources Statement
Data Access
Other Study Description Materials
File Description--f10981239
File: 5x8m-ab-rs1-310k-res-sasa.tab
	Number of cases: 450 No. of variables per record: 3 Type of File: text/tab-separated-values
Notes:	UNF:6:yHUe6yuYtaiDmtyrgy1IpA==
File Description--f10981245
File: 5x8m-ab-rs1-310k-rg.tab
	Number of cases: 50001 No. of variables per record: 5 Type of File: text/tab-separated-values
Notes:	UNF:6:ipRXfCkynACJuJ5QmOoNGA==
File Description--f10981234
File: 5x8m-ab-rs1-310k-rmsd.tab
	Number of cases: 50001 No. of variables per record: 2 Type of File: text/tab-separated-values
Notes:	UNF:6:Py2fdhGriGjP1hdhhW7r6w==
File Description--f10981236
File: 5x8m-ab-rs1-310k-rmsf.tab
	Number of cases: 449 No. of variables per record: 2 Type of File: text/tab-separated-values
Notes:	UNF:6:h5L9hdYKSfvd2atWyGjFfQ==
Variable Description
List of Variables:	Time (ps) - Time (ps) Average (nm\S2\N) - Average (nm\S2\N) Standard deviation (nm\S2\N) - Standard deviation (nm\S2\N) Time (ps) - Time (ps) Rg - Rg Rg\sX\N - Rg\sX\N Rg\sY\N - Rg\sY\N Rg\sZ\N - Rg\sZ\N Time (ps) - Time (ps) fter lsq fit to Protein - fter lsq fit to Protein 124 - 124 0.4426 - 0.4426
Variables
Time (ps)
f10981239 Location:	Summary Statistics: Max. 573.0; Mean 348.5; StDev 130.0480680363995; Min. 124.0; Valid 450.0 Variable Format: numeric Notes: UNF:6:x2efBYXHtjW5eYdkYZ04Bg==
Average (nm\S2\N)
f10981239 Location:	Summary Statistics: StDev 0.44855100113438456; Valid 450.0; Mean 0.4904777777777778; Max. 1.994; Min. 0.0 Variable Format: numeric Notes: UNF:6:HXJWFC9v1vrxfPg99A9TeA==
Standard deviation (nm\S2\N)
f10981239 Location:	Summary Statistics: Max. 0.449; Min. 0.0; StDev 0.0834909808019908; Valid 450.0; Mean 0.1152 Variable Format: numeric Notes: UNF:6:vL0BEsB4ihTKWSwFCEtwTg==
Time (ps)
f10981245 Location:	Summary Statistics: StDev 144341.8974172087; Mean 250000.0; Max. 500000.0; Valid 50001.0; Min. 0.0 Variable Format: numeric Notes: UNF:6:V/U9HvwwVxWNkckdgyZ8FQ==
Rg
f10981245 Location:	Summary Statistics: StDev 0.021844909761454874; Max. 2.65653; Min. 2.46452; Mean 2.5642358522829545; Valid 50001.0 Variable Format: numeric Notes: UNF:6:NgY9Yo49jWkHPLNNT4Ffpg==
Rg\sX\N
f10981245 Location:	Summary Statistics: Max. 2.49626; Min. 1.46468; Valid 50001.0; StDev 0.22290974372735195; Mean 2.137082567148657; Variable Format: numeric Notes: UNF:6:zRV1/VzudJ5ZF9XkvuchKg==
Rg\sY\N
f10981245 Location:	Summary Statistics: Valid 50001.0; StDev 0.2519097193341114; Max. 2.44108; Mean 2.0379664232715347; Min. 1.46345; Variable Format: numeric Notes: UNF:6:ddY1JdlWgojVXBHhhmG0vQ==
Rg\sZ\N
f10981245 Location:	Summary Statistics: Valid 50001.0; Mean 2.0627469384612303; StDev 0.25113259922865205; Min. 1.45158; Max. 2.44807 Variable Format: numeric Notes: UNF:6:cmFrMQbHZBgg64EFMIbFQw==
Time (ps)
f10981234 Location:	Summary Statistics: Min. 0.0; Max. 500.0000305; Mean 250.00001186618152; StDev 144.34190426882398; Valid 50001.0; Variable Format: numeric Notes: UNF:6:o4bJPZiIJHF1SeSgobH+/g==
fter lsq fit to Protein
f10981234 Location:	Summary Statistics: Min. 4.997E-4; Valid 50001.0; Mean 0.3198689799444011; Max. 0.5372661; StDev 0.05485271650692689; Variable Format: numeric Notes: UNF:6:e3jYqqAlvHfzCJ/397yf0A==
124
f10981236 Location:	Summary Statistics: Max. 573.0; Valid 449.0; Min. 125.0; Mean 349.0; StDev 129.7593927236098 Variable Format: numeric Notes: UNF:6:u3ROuXzVeX9ykyKc0jGfAA==
0.4426
f10981236 Location:	Summary Statistics: Min. 0.0701; Valid 449.0; Max. 1.5015; Mean 0.18910066815144766; StDev 0.14212954909951403 Variable Format: numeric Notes: UNF:6:f4ufbzXlxWzKnC3O0Kpdrw==
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-0ns.pdb
Notes:	application/vnd.palm
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-100ns.pdb
Notes:	application/vnd.palm
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-150ns.pdb
Notes:	application/vnd.palm
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-200ns.pdb
Notes:	application/vnd.palm
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-250ns.pdb
Notes:	application/vnd.palm
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-300ns.pdb
Notes:	application/vnd.palm
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-350ns.pdb
Notes:	application/vnd.palm
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-400ns.pdb
Notes:	application/vnd.palm
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-450ns.pdb
Notes:	application/vnd.palm
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-500ns.pdb
Notes:	application/vnd.palm
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-50ns.pdb
Notes:	application/vnd.palm
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-res-sasa.xvg
Notes:	application/octet-stream
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-rg.xvg
Notes:	application/octet-stream
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-rmsd.xvg
Notes:	application/octet-stream
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-rmsf.xvg
Notes:	application/octet-stream
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-sasa.csv
Notes:	text/comma-separated-values
Other Study-Related Materials
Label:	5x8m-ab-rs1-310k-sasa.xvg
Notes:	application/octet-stream