Replication Data for: Phenotype is sustained during hospital readmissions following treatment for complicated severe malnutrition among Kenyan children: A retrospective cohort study (doi:10.7910/DVN/IW8GLF)

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Replication Data for: Phenotype is sustained during hospital readmissions following treatment for complicated severe malnutrition among Kenyan children: A retrospective cohort study

doi:10.7910/DVN/IW8GLF

Harvard Dataverse

2020-09-17

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Ngari, Moses M.; Gonzales, Gerard Bryan; Berkley, James A., 2020, "Replication Data for: Phenotype is sustained during hospital readmissions following treatment for complicated severe malnutrition among Kenyan children: A retrospective cohort study", https://doi.org/10.7910/DVN/IW8GLF, Harvard Dataverse, V1, UNF:6:uzZNU4VVuVhMSa4ZUzSgAQ== [fileUNF]

Replication Data for: Phenotype is sustained during hospital readmissions following treatment for complicated severe malnutrition among Kenyan children: A retrospective cohort study

doi:10.7910/DVN/IW8GLF

Ngari, Moses M. (KEMRI-Wellcome Trust Research Programme, P.O Box 230, Kilifi, 80108, Kenya; The Childhood Acute Illness & Nutrition (CHAIN) Network, Nairobi, Kenya)

Gonzales, Gerard Bryan (Laboratory of Gastroenterology, Department of Internal Medicine and Paediatrics, Faculty ofMedicine and Health Sciences, Ghent)

Berkley, James A. (The Childhood Acute Illness & Nutrition (CHAIN) Network, Nairobi, Kenya; KEMRI-Wellcome Trust Research Programme, P.O Box 230, Kilifi, 80108, Kenya; Centre for Tropical Medicine & Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, UK)

Harvard Dataverse

Ngari, Moses M.

Ngari, Moses M.

2020-09-16

https://doi.org/10.7910/DVN/IW8GLF

Medicine, Health and Life Sciences, complicated SAM, kwashiorkor, malnutrition, marasmus, readmission, relapse, severe acute malnutrition

<p>This is a replication dataset for the research publication: <a href="https://doi.org/10.1111/mcn.12913">Gonzales, G.B., Ngari, M.M., Njunge, J.M., Thitiri, J., Mwalekwa, L., Mturi, N., Mwangome, M.K., Ogwang, C., Nyaguara, A. and Berkley, J.A., 2020. Phenotype is sustained during hospital readmissions following treatment for complicated severe malnutrition among Kenyan children: A retrospective cohort study. Maternal & child nutrition, 16(2), p.e12913.</a></p> <p>The objective of the study was to test the association between complicated severe acute malnutrition (cSAM) phenotype at index admission and readmission following recovery.</p>

<p>Publications based on this data collection should acknowledge this source by means of bibliographic citation.</p>

<p>This data is licensed under the <a href="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</a> <a href="https://creativecommons.org/licenses/by/4.0/legalcode"><img src="https://i.creativecommons.org/l/by/3.0/88x31.png"> </a> </p>

<p>Access to these data requires submission of a formal request for consideration by our Data Governance Committee. </p> <strong>How to request</strong> <ol> <li>Download and complete the <a href="https://kemri-wellcome.org/wp-content/uploads/2016/02/Data-Sharing-guidelines-External-requests.docx"><strong>data request form</strong></a></li> <li> Email completed data request form to the Data Governance Committee at <a href="mailto:dgc@kemri-wellcome.org?cc=lmwango@kemri-wellcome.org?Subject=Data%20Access%20Request"><strong>dgc@kemri-wellcome.org</strong></a> </li> </ol>

Gonzales, G.B., Ngari, M.M., Njunge, J.M., Thitiri, J., Mwalekwa, L., Mturi, N., Mwangome, M.K., Ogwang, C., Nyaguara, A. and Berkley, J.A., 2020. Phenotype is sustained during hospital readmissions following treatment for complicated severe malnutrition among Kenyan children: A retrospective cohort study. Maternal & child nutrition, 16(2), p.e12913.

10.1111/mcn.12913

Gonzales, G.B., Ngari, M.M., Njunge, J.M., Thitiri, J., Mwalekwa, L., Mturi, N., Mwangome, M.K., Ogwang, C., Nyaguara, A. and Berkley, J.A., 2020. Phenotype is sustained during hospital readmissions following treatment for complicated severe malnutrition among Kenyan children: A retrospective cohort study. Maternal & child nutrition, 16(2), p.e12913.

• Number of cases: 1850

• No. of variables per record: 22

• Type of File: text/tab-separated-values

UNF:6:hOj0kI+oDc2EH5vb2ZzEBw==

This file contains multiple records for hospital readmissions, clinical, demographic, dates, and time in the study from the Randomised controlled trial (SSC 1562)

• Number of cases: 1781

• No. of variables per record: 29

• Type of File: text/tab-separated-values

UNF:6:loCSHvVzFj6u8FELvOxURw==

This file contains multiple records for hospital readmissions, clinical, demographic, dates, and time in the study from the KCH Pediatric admissions linked to the KHDSS from 2002 to 2016 (SCC 2778)

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competing_risk.R

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This analysis script uses the competing_risk_multiple events.csv dataset and computes the incidence of readmission and examines the association between SAM phenotype at index admission on the hospital using competing risk analysis model (using timereg package for R)

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Phenotype_sustainability_Readme.txt

text/plain

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Phenotype_Sustaninability_Dataset_Codebook.pdf

application/pdf

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R_code_SAMreadmission.R

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This analysis script uses the cSAM_readmission_dataset.csv dataset to get summary of the KCH admissions, compute incidence of readmission and association between index readmission and readmission cSAM phenotypes

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R_relapse_updated.R

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This analysis script uses the cSAM_readmission_dataset.csv dataset to get the numbers of Kwash relapse during readmission reported in the Figure 1 (b)

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