RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (313K, 40°C, 100 ns) , seed #2 (doi:10.7910/DVN/LDQHMY)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
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RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (313K, 40°C, 100 ns) , seed #2

doi:10.7910/DVN/LDQHMY

Harvard Dataverse

2025-03-11

1

PCD, Thermo, 2025, "RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (313K, 40°C, 100 ns) , seed #2", https://doi.org/10.7910/DVN/LDQHMY, Harvard Dataverse, V1, UNF:6:s/ohYbETpmbGSPucqL4myw== [fileUNF]

RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (313K, 40°C, 100 ns) , seed #2

doi:10.7910/DVN/LDQHMY

PCD, Thermo (Chonnam National University)

Harvard Dataverse

PCD, Thermo

PCD, Thermo

2025-03-11

https://doi.org/10.7910/DVN/LDQHMY

Computer and Information Science, JUNV surface glycoprotein receptor-binding subunit (GP1)

RCSB PDB - 5EN2 : Junín virus surface glycoprotein receptor-binding subunit bound to GD01 antibody, (313K, 40°C, 100 ns) , seed #2.

• Number of cases: 10001

• No. of variables per record: 3

• Type of File: text/tab-separated-values

UNF:6:SQmHGFjLrLv8/veZ12UQFA==

• Number of cases: 577

• No. of variables per record: 3

• Type of File: text/tab-separated-values

UNF:6:bZu0yCg8/Ixp3j3mpPxOyQ==

• Number of cases: 10001

• No. of variables per record: 5

• Type of File: text/tab-separated-values

UNF:6:sZdBJ1KdXGtf3XH9It/YbQ==

• Number of cases: 10001

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:ZqKXESDfVhR9mp/NQPHhPQ==

• Number of cases: 576

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:vcYagMjrc9jK1/VoUOxkbA==

• Number of cases: 10001

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:SMsEQU5bb7/LZ20zh0/bEQ==

• Time (ps) - Time (ps)
• Hydrogen bonds - Hydrogen bonds
• Pairs within 0.35 nm - Pairs within 0.35 nm
• Time (ps) - Time (ps)
• Average (nm\S2\N) - Average (nm\S2\N)
• Standard deviation (nm\S2\N) - Standard deviation (nm\S2\N)
• Time (ps) - Time (ps)
• Rg - Rg
• Rg\sX\N - Rg\sX\N
• Rg\sY\N - Rg\sY\N
• Rg\sZ\N - Rg\sZ\N
• Time (ps) - Time (ps)
• fter lsq fit to Protein - fter lsq fit to Protein
• 1 - 1
• 0.3248 - 0.3248
• Time (ps) - Time (ps)
• Total - Total

f10979543 Location:

Summary Statistics: Mean 49.99999999999999; Min. 0.0; Valid 10001.0; StDev 28.871843550421236; Max. 100.0;

Variable Format: numeric

Notes: UNF:6:Xd0BNWL8q82nJpopTOPPCw==

f10979543 Location:

Summary Statistics: Mean 10.414658534146588; Max. 19.0; Min. 3.0; Valid 10001.0; StDev 2.382843072023277;

Variable Format: numeric

Notes: UNF:6:+tbsGRqa1vuQnoRYIjoGUA==

f10979543 Location:

Summary Statistics: Valid 10001.0; Min. 0.0; Max. 18.0; StDev 2.597020120955787; Mean 6.482351764823533

Variable Format: numeric

Notes: UNF:6:zMDGuADxb5NaeC/DgsDUOg==

f10979519 Location:

Summary Statistics: Max. 577.0; Min. 1.0; Valid 577.0; StDev 166.70982774469738; Mean 289.0;

Variable Format: numeric

Notes: UNF:6:PsvLRC9ISfmMExjkyzM3tg==

f10979519 Location:

Summary Statistics: Max. 2.431; Mean 0.47961871750433277; Valid 577.0; StDev 0.45567334966343065; Min. 0.0

Variable Format: numeric

Notes: UNF:6:mIkLDmV0r0Ak9RcmUGr12A==

f10979519 Location:

Summary Statistics: Mean 0.1040051993067591; Min. 0.001; StDev 0.06653412585640417; Valid 577.0; Max. 0.438

Variable Format: numeric

Notes: UNF:6:tU7QDeZFN1MpDFi505fo8Q==

f10979568 Location:

Summary Statistics: StDev 28871.843550421232; Min. 0.0; Mean 50000.0; Max. 100000.0; Valid 10001.0

Variable Format: numeric

Notes: UNF:6:yng+oh+Vq/c2RVgjFBvZ7g==

f10979568 Location:

Summary Statistics: Valid 10001.0; Min. 2.98523; Mean 3.070282701729827; Max. 3.16589; StDev 0.02672446520026027

Variable Format: numeric

Notes: UNF:6:Gj2oEM4eGClE1w3px+3pig==

f10979568 Location:

Summary Statistics: Min. 1.98001; Valid 10001.0; Max. 2.98646; Mean 2.6222572592740723; StDev 0.22772017808406395

Variable Format: numeric

Notes: UNF:6:oIafC9vghQCNrVelbM8fMQ==

f10979568 Location:

Summary Statistics: Valid 10001.0; Min. 1.43063; Mean 2.138895818418158; StDev 0.32994801822413344; Max. 2.75551

Variable Format: numeric

Notes: UNF:6:wFCU3gS4etH0oIOXVxBIvg==

f10979568 Location:

Summary Statistics: Valid 10001.0; Max. 2.97566; Min. 2.01959; Mean 2.6827400249975004; StDev 0.2140000311913288;

Variable Format: numeric

Notes: UNF:6:LtoIG1Xiu5kHm2tloF+kEw==

f10979546 Location:

Summary Statistics: Valid 10001.0; StDev 28.87184491731381; Min. 0.0; Mean 50.00000236995278; Max. 100.0000076

Variable Format: numeric

Notes: UNF:6:o8DlsKAspsa1vrbsM5xrhw==

f10979546 Location:

Summary Statistics: Min. 5.002E-4; StDev 0.09053289777864422; Valid 10001.0; Mean 0.32745774345565437; Max. 0.560375;

Variable Format: numeric

Notes: UNF:6:8hO1GKJpBZukWSCy1YH+Xg==

f10979527 Location:

Summary Statistics: Min. 2.0; Max. 577.0; Mean 289.5; StDev 166.42115250171776; Valid 576.0

Variable Format: numeric

Notes: UNF:6:iMJtm0c7VE5xhQMzN6cCig==

f10979527 Location:

Summary Statistics: Max. 0.5197; Min. 0.0734; Mean 0.1763611111111111; StDev 0.06021523696943344; Valid 576.0

Variable Format: numeric

Notes: UNF:6:2eVvQ1V5TQg1bmOuSujG1Q==

f10979542 Location:

Summary Statistics: Mean 50000.0; StDev 28871.843550421232; Max. 100000.0; Min. 0.0; Valid 10001.0;

Variable Format: numeric

Notes: UNF:6:yng+oh+Vq/c2RVgjFBvZ7g==

f10979542 Location:

Summary Statistics: StDev 3.2941219187895094; Valid 10001.0; Mean 276.74454444555545; Max. 289.282; Min. 261.469;

Variable Format: numeric

Notes: UNF:6:aBSTdQvmCdr6YLYFpM0g5Q==

Label:

5en2-313k-0ns.pdb

application/vnd.palm

Label:

5en2-313k-100ns.pdb

application/vnd.palm

Label:

5en2-313k-50ns.pdb

application/vnd.palm

Label:

5en2-m.pdb

application/vnd.palm

Label:

5en2-part2-313k-hbond.xvg

application/octet-stream

Label:

5en2-part2-313k-res-sasa.xvg

application/octet-stream

Label:

5en2-part2-313k-rg.xvg

application/octet-stream

Label:

5en2-part2-313k-rmsd.xvg

application/octet-stream

Label:

5en2-part2-313k-rmsf.xvg

application/octet-stream

Label:

5en2-part2-313k-sasa.xvg

application/octet-stream

Label:

complex.gro

application/octet-stream

Label:

dynamic-nopbc.xtc

application/octet-stream

Label:

em.edr

application/octet-stream

Label:

em.gro

application/octet-stream

Label:

em.log

text/plain

Label:

em.mdp

application/octet-stream

Label:

em.tpr

application/octet-stream

Label:

em.trr

application/octet-stream

Label:

index.ndx

application/octet-stream

Label:

ions.mdp

application/octet-stream

Label:

ions.tpr

application/octet-stream

Label:

md.mdp

application/octet-stream

Label:

mdout.mdp

application/octet-stream

Label:

md_0_10.cpt

application/mac-compactpro

Label:

md_0_10.edr

application/octet-stream

Label:

md_0_10.gro

application/octet-stream

Label:

md_0_10.log

text/plain

Label:

md_0_10.tpr

application/octet-stream

Label:

md_0_10_prev.cpt

application/mac-compactpro

Label:

newbox.gro

application/octet-stream

Label:

npt.cpt

application/mac-compactpro

Label:

npt.edr

application/octet-stream

Label:

npt.gro

application/octet-stream

Label:

npt.log

text/plain

Label:

npt.mdp

application/octet-stream

Label:

npt.tpr

application/octet-stream

Label:

npt.trr

application/octet-stream

Label:

nvt.cpt

application/mac-compactpro

Label:

nvt.edr

application/octet-stream

Label:

nvt.gro

application/octet-stream

Label:

nvt.log

text/plain

Label:

nvt.mdp

application/octet-stream

Label:

nvt.tpr

application/octet-stream

Label:

nvt.trr

application/octet-stream

Label:

posre_Protein_chain_A.itp

application/vnd.shana.informed.formtemplate

Label:

posre_Protein_chain_B.itp

application/vnd.shana.informed.formtemplate

Label:

posre_Protein_chain_C.itp

application/vnd.shana.informed.formtemplate

Label:

solv.gro

application/octet-stream

Label:

solv_ions.gro

application/octet-stream

Label:

topol.top

application/octet-stream

Label:

topol.top.1

application/octet-stream

Label:

topol.top.2

application/octet-stream

Label:

topol_Protein_chain_A.itp

application/vnd.shana.informed.formtemplate

Label:

topol_Protein_chain_B.itp

application/vnd.shana.informed.formtemplate

Label:

topol_Protein_chain_C.itp

application/vnd.shana.informed.formtemplate

Label:

xvg2csv.py

text/x-python