Replication Data for: Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya (doi:10.7910/DVN/LWFP30)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
Entire Codebook

Replication Data for: Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya

doi:10.7910/DVN/LWFP30

Harvard Dataverse

2020-05-28

2

Mweu, Marshal; Murunga, Nickson; Otieno, Juliet; Nokes, David James, 2020, "Replication Data for: Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya", https://doi.org/10.7910/DVN/LWFP30, Harvard Dataverse, V2, UNF:6:ffOtCWO/QNAWjzYfpYITLA== [fileUNF]

Replication Data for: Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya

doi:10.7910/DVN/LWFP30

Mweu, Marshal (School of Public Health, University of Nairobi)

Murunga, Nickson (KEMRI Centre for Geographic Medicine Research, Coast, KiIifi, Kenya)

Otieno, Juliet (KEMRI Centre for Geographic Medicine Research, Coast, KiIifi, Kenya)

Nokes, David James (KEMRI Centre for Geographic Medicine Research, Coast, KiIifi, Kenya)

Harvard Dataverse

Mweu, Marshal

Mweu, Marshal

2020-05-28

https://doi.org/10.7910/DVN/LWFP30

Medicine, Health and Life Sciences, Bayesian latent class analysis, Respiratory syncytial virus, Direct immunofluorescence test, PCR, Test accuracy, Hospitalised children

<p>This is a replication dataset for the paper "<i>Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya</i>."</p> <p>The dataset is part of the long-term continuous respiratory virus surveillance among pneumonia admissions to Kilifi County Hospital (KCH) study. This datasets contains results of samples tested by Immunofluorescence Assay Test (IFAT), Multiplex PCR (MPX) and Fast Track Diagnostics (FTD) between August 2011 to December 2013. Aside from the samples, it also contains the patients’ sociodemographic characteristics (date of admission, sex, age, area of residence and presenting symptoms). The dataset is used to infer accuracy of diagnostic test that are used to test the presence of of respiratory syncytial virus infection within a paediatric hospital in Kilifi county.</p>

Publications based on this data collection should acknowledge this source by means of bibliographic citation.

<p>This data is licensed under the <a href="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</a> <a href="https://creativecommons.org/licenses/by/4.0/legalcode"><img src="https://i.creativecommons.org/l/by/3.0/88x31.png"> </a> </p>

The datasets and documentation used in the analysis are publicly available. For more detailed information beyond the metadata/documentation provided, please contact the author <a href="mailto:marshal@uonbi.ac.ke">Marshal Mweu</a> and/or <a href="mailto:dgc@kemri-wellcome.org">Data Governance Committee</a>

Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya. [Manuscript in preparation]

Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya. [Manuscript in preparation]

• Number of cases: 1458

• No. of variables per record: 47

• Type of File: text/tab-separated-values

UNF:6:ffOtCWO/QNAWjzYfpYITLA==

Analysis dataset

• id - id
• year - year
• ifat_status_rsv - ifat_status_rsv
• ifat_pos_index - ifat_pos_index
• rsva - rsva
• rsvb - rsvb
• ftd_ct_rsvab - ftd_ct_rsvab
• sex - sex
• muac - muac
• fever - fever
• fever_drn - fever_drn
• cough - cough
• cough_drn - cough_drn
• breathing_diff - breathing_diff
• diarrhoea - diarrhoea
• diarrhoea_drn - diarrhoea_drn
• vomiting - vomiting
• vomiting_drn - vomiting_drn
• convulsion - convulsion
• resp_rate - resp_rate
• oxysat - oxysat
• temp_axill - temp_axill
• temp_gradient - temp_gradient
• cap_refill - cap_refill
• pallor - pallor
• flaring - flaring
• indrawing - indrawing
• resp_deep - resp_deep
• percussion_dull - percussion_dull
• crackles - crackles
• wheeze - wheeze
• oedema - oedema
• wasting - wasting
• skin_hair - skin_hair
• desquamation - desquamation
• conscious_level - conscious_level
• disch_type - disch_type
• iage_mths - iage_mths
• lethargy - lethargy
• prost_uncons - prost_uncons
• oed_was_muac - oed_was_muac
• tachyc - tachyc
• bradyc - bradyc
• hypoxia - hypoxia
• tachyp - tachyp
• pulse_vol_weak - pulse_vol_weak
• pneumo_stat_ip - pneumo_stat_ip

f3851692 Location:

Summary Statistics: Min. 242950.0; Valid 1458.0; Max. 269606.0; Mean 255555.3964334705; StDev 7411.837106524887

Variable Format: numeric

Notes: UNF:6:uh6iTxpq/117/EbuUhpAjQ==

f3851692 Location:

Summary Statistics: StDev 0.6716333234127952; Valid 1458.0; Max. 2013.0; Min. 2011.0; Mean 2012.1303155006858;

Variable Format: numeric

Notes: UNF:6:7j71c+Nvimbx44AeTIvs6Q==

f3851692 Location:

Variable Format: character

Notes: UNF:6:0zdRomq7iRBvDo1+/oU9zw==

f3851692 Location:

Summary Statistics: Mean NaN; Max. NaN; Valid 0.0; Min. NaN; StDev NaN;

Variable Format: numeric

Notes: UNF:6:W3r9zGaABXe5xLbRo69SWg==

f3851692 Location:

Summary Statistics: Min. 0.0; Mean 2.956104252400538; StDev 7.897211599337924; Valid 1458.0; Max. 39.0

Variable Format: numeric

Notes: UNF:6:8NW8na0xjno1266F0pRSdA==

f3851692 Location:

Summary Statistics: Valid 1458.0; Min. 0.0; StDev 7.128265118246991; Max. 39.0; Mean 2.336076817558304;

Variable Format: numeric

Notes: UNF:6:fr7Q3PxuO5TZ5y7lHeyefw==

f3851692 Location:

Summary Statistics: Min. 0.0; Max. 39.0; StDev 10.389300031073072; Mean 5.758573388203031; Valid 1458.0

Variable Format: numeric

Notes: UNF:6:4mUWW56QBrDXnPAfywB12w==

f3851692 Location:

Variable Format: character

Notes: UNF:6:hZYjsiqC7KgoAEPrthLmpg==

f3851692 Location:

Summary Statistics: Max. 19.0; Min. 5.0; Mean 12.305459571527296; Valid 1447.0; StDev 2.252551476237921

Variable Format: numeric

Notes: UNF:6:tH83nI4wyKbil/LiooWUaA==

f3851692 Location:

Variable Format: character

Notes: UNF:6:EcUfholaGXA0YjvWVRgPVw==

f3851692 Location:

Summary Statistics: StDev 12.796045228002095; Min. 1.0; Max. 120.0; Mean 5.079173838209973; Valid 1162.0;

Variable Format: numeric

Notes: UNF:6:ye8pt6Jq2HPC6dRsIUEezA==

f3851692 Location:

Variable Format: character

Notes: UNF:6:TcIC2wz5E7TCiY/KeZG6BQ==

f3851692 Location:

Summary Statistics: Min. 1.0; Mean 4.845276872964166; Max. 120.0; StDev 9.398997787954922; Valid 1228.0

Variable Format: numeric

Notes: UNF:6:DfOyv2vEvvzf9gYn5v4T+w==

f3851692 Location:

Variable Format: character

Notes: UNF:6:htrPRZe6YsD2G/sENrb+Fw==

f3851692 Location:

Variable Format: character

Notes: UNF:6:Sf657OCPgLEknNUMsCcWKg==

f3851692 Location:

Summary Statistics: Max. 99.0; StDev 12.144663194328919; Mean 5.4156626506024095; Min. 1.0; Valid 166.0;

Variable Format: numeric

Notes: UNF:6:V9y9AoHd26KwY+jRa78A5g==

f3851692 Location:

Variable Format: character

Notes: UNF:6:a1DLhOKRbCg1T57IOjNiWQ==

f3851692 Location:

Summary Statistics: StDev 7.957153627302925; Mean 3.249110320284696; Min. 1.0; Valid 281.0; Max. 120.0

Variable Format: numeric

Notes: UNF:6:U5Z2m49C/+B6w42h7KGYBQ==

f3851692 Location:

Variable Format: character

Notes: UNF:6:BoDHEa54+mzQduRTaexejw==

f3851692 Location:

Summary Statistics: Max. 110.0; Min. 0.0; Mean 56.46639231824416; StDev 14.845275061204624; Valid 1458.0

Variable Format: numeric

Notes: UNF:6:ZyE9ezO6gxTD9yQkvy9nXA==

f3851692 Location:

Summary Statistics: StDev 9.38804834704023; Max. 100.0; Valid 1458.0; Min. 0.0; Mean 91.96639231824417;

Variable Format: numeric

Notes: UNF:6:vlS0Epw7mioiwinsmipBDQ==

f3851692 Location:

Summary Statistics: Valid 1457.0; Mean 37.6904598490048; Min. 31.0; Max. 42.0; StDev 1.2577772868154509

Variable Format: numeric

Notes: UNF:6:O3s4KI4F8bBnt8/Ufab3wA==

f3851692 Location:

Variable Format: character

Notes: UNF:6:zAkjsspxGk7SEZtw/n+Zrg==

f3851692 Location:

Summary Statistics: StDev 0.6333534981119273; Mean 1.5054869684499312; Max. 5.0; Valid 1458.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:4kJO5MkNog1cWCtVlBE/Bw==

f3851692 Location:

Variable Format: character

Notes: UNF:6:3zb9MpHzSfp8gWJaTIQNZg==

f3851692 Location:

Variable Format: character

Notes: UNF:6:HGwG4yR8f+/9xNzOTsbPjg==

f3851692 Location:

Variable Format: character

Notes: UNF:6:i0vKF6iNebc34cQ+12Bihw==

f3851692 Location:

Variable Format: character

Notes: UNF:6:vwceA4O1uweag6252vbCCg==

f3851692 Location:

Variable Format: character

Notes: UNF:6:2qIUHlPGkM8zYAUWF0/ccw==

f3851692 Location:

Variable Format: character

Notes: UNF:6:+CesjkYiFxcEt2d8wd0Byg==

f3851692 Location:

Variable Format: character

Notes: UNF:6:3IOgmpxPbsOrktvW9/JR4Q==

f3851692 Location:

Variable Format: character

Notes: UNF:6:ajhkF5/l19xfV221AKQRww==

f3851692 Location:

Variable Format: character

Notes: UNF:6:FEiF8xmDXmDOqz2Ii/htPw==

f3851692 Location:

Variable Format: character

Notes: UNF:6:DN00L+k5LYLOnklWPAaRxQ==

f3851692 Location:

Variable Format: character

Notes: UNF:6:COEGewt6/l7macrcboKbIw==

f3851692 Location:

Variable Format: character

Notes: UNF:6:i/YgYhf/Y+6d/ikJiaPZJA==

f3851692 Location:

Variable Format: character

Notes: UNF:6:fc6yzJ2HyZC6RFGmc/Z6jQ==

f3851692 Location:

Summary Statistics: Valid 1458.0; Mean 11.710562414266144; StDev 12.958776764118273; Min. 0.0; Max. 59.0;

Variable Format: numeric

Notes: UNF:6:6th0+3RjZppkhEp70hmRlg==

f3851692 Location:

Variable Format: character

Notes: UNF:6:lomBLfYxEcwzhrF8gQqjxA==

f3851692 Location:

Variable Format: character

Notes: UNF:6:0QcZTsBO/X3U7ROsJADPfg==

f3851692 Location:

Summary Statistics: StDev 0.3593992650980956; Max. 1.0; Min. 0.0; Valid 1458.0; Mean 0.15226337448559718

Variable Format: numeric

Notes: UNF:6:Ln33E8V1yNKVTjkwC6rRIA==

f3851692 Location:

Variable Format: character

Notes: UNF:6:W0nKlIUqU8akhdNg/vzotw==

f3851692 Location:

Variable Format: character

Notes: UNF:6:0apGwRnYWLL4m8TvRGujjQ==

f3851692 Location:

Variable Format: character

Notes: UNF:6:+Acj5VviQP/lBSuQxY+7GA==

f3851692 Location:

Variable Format: character

Notes: UNF:6:1gmmZsZ/usAUBbSqPtWRpg==

f3851692 Location:

Variable Format: character

Notes: UNF:6:V/JcVFDuIgmc/Zik4UDkeQ==

f3851692 Location:

Variable Format: character

Notes: UNF:6:H2k5cWVMptPpyMLTpirrwA==

Label:

BLCM_RSV_tests_code.R

Text:

R script for analysis

type/x-r-syntax

Label:

MweuMarshal_RSV_Diagnostics_Codebook.pdf

Text:

Data dictionary contain variable description and value labels

application/pdf

Label:

MweuMarshal_RSV_Diagnostics_Readme.txt

Text:

Readme file

text/plain