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Part 1: Document Description
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Citation |
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Title: |
Replication Data for: Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007-2016 |
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Identification Number: |
doi:10.7910/DVN/MJPRLV |
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Distributor: |
Harvard Dataverse |
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Date of Distribution: |
2019-08-09 |
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Version: |
1 |
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Bibliographic Citation: |
Oketch, John W.; Kamau, Everlyn; Otieno, Grieven P.; Otieno, James R.; Agoti, Charles N.; Nokes, D. James, 2019, "Replication Data for: Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007-2016", https://doi.org/10.7910/DVN/MJPRLV, Harvard Dataverse, V1, UNF:6:z6/ou+m+hgyBHz1x9okgbQ== [fileUNF] |
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Citation |
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Title: |
Replication Data for: Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007-2016 |
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Identification Number: |
doi:10.7910/DVN/MJPRLV |
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Authoring Entity: |
Oketch, John W. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Kamau, Everlyn (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Otieno, Grieven P. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Otieno, James R. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Agoti, Charles N. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Nokes, D. James (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Other identifications and acknowledgements: |
Mwango, Lillian |
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Grant Number: |
02975, 100542, 084633, and 077092 |
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Distributor: |
Harvard Dataverse |
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Access Authority: |
Oketch, John W. |
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Access Authority: |
Nokes, D. James |
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Depositor: |
Oketch, John |
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Date of Deposit: |
2018-10-08 |
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Holdings Information: |
https://doi.org/10.7910/DVN/MJPRLV |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences, Human Metapneuomovirus, Temporal, Prevalence, Genotype, Epidemic |
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Abstract: |
<p>These data include demographic, clinical results and sequence data obtained from a hospital-based surveillance of acute respiratory infections among children aged <5 years. Nasal swabs collected from these children were tested for HMPV and other respiratory viral infections using Real time PCR. Samples that tested positive for HMPV were later typed through sequencing and phylogenetic analyses of fusion (F) and glycoprotein attachment (G) genes.</p> |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Citation Requirement: |
Publications based on this data collection should acknowledge this source by means of bibliographic citation. To ensure that such source attributions are captured for bibliographic utilities, citations must appear in footnotes or in the reference section of publications. |
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Notes: |
<p>The datasets and documents are made available under <a href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License </a> <img src="https://i.creativecommons.org/l/by/4.0/88x31.png"> |
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<p>Access to some of the files is restricted as they contain personally identifiable information. Users may request access to files and/or more detailed information beyond the metadata and documentation provided by submitting this <a href="http://kemri-wellcome.org/about-us/#ChildVerticalTab_15">form</a> for consideration by our Data Governance Committee. You may also email the authors or the Data Governance Committee via dgc@kemri-wellcome.org </p> |
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Other Study Description Materials |
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File Description--f3493167 |
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File: KCH_HMPV_cases_analysis.tab |
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Notes: |
UNF:6:/glTd50UK2JnUFR3iBfY1w== |
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File Description--f3493168 |
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File: KCH_HMPV_prev_data.tab |
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Notes: |
UNF:6:TVJ4ZZRfNyULyhNh8Teymw== |
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File Description--f3493375 |
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File: KCH_HMPV_subtypes.tab |
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Notes: |
UNF:6:dqdWura13y8tAsQKCH7bZg== |
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List of Variables: | |
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Variables |
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f3493168 Location: |
Summary Statistics: Mean 2011.5; Max. 2016.0; Min. 2007.0; StDev 3.0276503540974917; Valid 10.0 Variable Format: numeric Notes: UNF:6:p0QxvlEcprKYSok3luIbbA== |
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f3493168 Location: |
Summary Statistics: Min. 566.0; Max. 1174.0; Mean 907.9; StDev 187.03918187255726; Valid 10.0 Variable Format: numeric Notes: UNF:6:OuhtJK2OkLkpbmLEDjI4TQ== |
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f3493168 Location: |
Summary Statistics: Min. 435.0; Mean 675.6; Valid 10.0; StDev 161.16602895427093; Max. 943.0 Variable Format: numeric Notes: UNF:6:l+IswrLnsBYQL09pGAQmvw== |
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f3493168 Location: |
Summary Statistics: Min. 8.0; Valid 10.0; Mean 27.4; Max. 50.0; StDev 13.86602562620835; Variable Format: numeric Notes: UNF:6:uu3DXQWjqkuVHHp+uk9DNQ== |
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Label: |
1_hmpv_types_charts.do |
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Text: |
This script generates charts of types observed by epidemic |
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Notes: |
application/x-stata-syntax |
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Label: |
2_hmpv_prevalence.do |
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Text: |
This script is used to calculate HMPV prevalence and their 95% CI. |
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Notes: |
application/x-stata-syntax |
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Label: |
3_analysis.do |
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Text: |
In this script, perform descriptive and inferential statistics on HMPV cases only |
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Notes: |
application/x-stata-syntax |
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Label: |
KCH_HMPV_Codebook.pdf |
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Text: |
Codebook |
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Notes: |
application/pdf |
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Label: |
KCH_HMPV_Readme.txt |
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Notes: |
text/plain |