|
View: |
Part 1: Document Description
|
|
Citation |
|
|---|---|
|
Title: |
Replication Data for: "Data-driven decentralized breeding increases genetic gain in challenging crop production environments" |
|
Identification Number: |
doi:10.7910/DVN/OEZGVP |
|
Distributor: |
Harvard Dataverse |
|
Date of Distribution: |
2020-05-12 |
|
Version: |
1 |
|
Bibliographic Citation: |
de Sousa, Kauê; van Etten, Jacob; Poland, Jesse; Fadda, Carlo; Jannink, Jean-Luc; Gebrehawaryat, Yosef; Lakew, Basazen Fantahun; Mengistu, Dejene K.; Pè, Mario Enrico; Solberg, Svein Øivind; Dell'Acqua, Matteo, 2020, "Replication Data for: "Data-driven decentralized breeding increases genetic gain in challenging crop production environments"", https://doi.org/10.7910/DVN/OEZGVP, Harvard Dataverse, V1, UNF:6:QUZ55x4U3JRGMDb7PNfHpQ== [fileUNF] |
|
Citation |
|
|
Title: |
Replication Data for: "Data-driven decentralized breeding increases genetic gain in challenging crop production environments" |
|
Identification Number: |
doi:10.7910/DVN/OEZGVP |
|
Authoring Entity: |
de Sousa, Kauê (Bioversity International) |
|
van Etten, Jacob (Bioversity International) |
|
|
Poland, Jesse (Kansas State University) |
|
|
Fadda, Carlo (Bioversity International) |
|
|
Jannink, Jean-Luc (Cornell University) |
|
|
Gebrehawaryat, Yosef (Bioversity International) |
|
|
Lakew, Basazen Fantahun (Scuola Superiore Sant'Anna) |
|
|
Mengistu, Dejene K. (Bioversity International) |
|
|
Pè, Mario Enrico (Scuola Superiore Sant'Anna) |
|
|
Solberg, Svein Øivind (Inland Norway University) |
|
|
Dell'Acqua, Matteo (Scuola Superiore Sant'Anna) |
|
|
Other identifications and acknowledgements: |
Kauê de Sousa |
|
Producer: |
Bioversity International |
|
Grant Number: |
202100-2817 |
|
Grant Number: |
202100-2817 |
|
Distributor: |
Harvard Dataverse |
|
Access Authority: |
Alliance Data Management |
|
Depositor: |
Bioversity International |
|
Date of Deposit: |
2020-04-24 |
|
Holdings Information: |
https://doi.org/10.7910/DVN/OEZGVP |
|
Study Scope |
|
|
Keywords: |
Agricultural Sciences, ABIOTIC STRESS, BREEDING, CLIMATE CHANGE, BIODIVERSITY, PARTICIPATORY RESEARCH, PLANT BREEDING, TRITICUM DURUM, WHEAT, CGIAR Research Program on Climate Change, Agriculture and Food Security, Biodiversity for Food and Agriculture, Africa |
|
Abstract: |
A panel of fully genotyped 400 wheat lines derived from genebank accessions in two managed fields in the Ethiopian highlands in 2012 and 2013 were evaluated. We collected phenotypic data and farmer evaluation data in this trial. For the decentralized trial, we distributed a subset of 41 genotypes as packaged sets containing incomplete blocks of three genotypes, plus one commercial variety for each farmer, following the “tricot” citizen science approach. We distributed these packages to 1,165 farmers who planted them on their farms across three regions of Ethiopia. Analyzing data from the centralized and decentralized trials in a side-by-side comparison, we evaluated if our approach can increase genetic gain in marginal crop production environments unlocking the full potential of genomics assisted breeding. For the full replication workflow please visit the GitHub repository (https://github.com/agrobioinfoservices/tricot-genomic). |
|
Time Period: |
2013-2016 |
|
Country: |
Ethiopia |
|
Geographic Coverage: |
(Tigray, Oromya, Amhara) |
|
Kind of Data: |
Crop/Field data |
|
Methodology and Processing |
|
|
Sources Statement |
|
|
Data Access |
|
|
Notes: |
<P><a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/4.0/"><img alt="Creative Commons Licence" style="border-width:0" src="https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png" /></a><br />This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/4.0/">Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License</a>.</P> |
|
Other Study Description Materials |
|
|
File Description--f3814233 |
|
|
File: 1_ReadmeFile_DecentralizedBreeding_DurumWheat.tab |
|
|
|
|
Notes: |
UNF:6:ZuyH2yJpCF8ud3G6D+vWAQ== |
|
File Description--f3814237 |
|
|
File: 2_DataDictionary_DecentralizedBreeding_DurumWheat.tab |
|
|
|
|
Notes: |
UNF:6:y254wVVusIk0Ow32A2+YGQ== |
|
File Description--f3814236 |
|
|
File: 3_CodeList_DecentralizedBreeding_DurumWheat.tab |
|
|
|
|
Notes: |
UNF:6:RYc9qLyqHPgINQY75of98w== |
|
File Description--f3814235 |
|
|
File: 4_DataFile_DecentralizedBreeding_DurumWheat.tab |
|
|
|
|
Notes: |
UNF:6:L/h4Lvs6xQlvC3ABwvJzbw== |
|
File Description--f3814234 |
|
|
File: 5_AllFiles_DecentralizedBreeding_DurumWheat.tab |
|
|
|
|
Notes: |
UNF:6:2lWsgqa471NeuuizR+VKeg== |
|
List of Variables: |
|
|
Variables |
|
|
f3814233 Location: |
Variable Format: character Notes: UNF:6:nYA4wRjwAyX1VpcOq+1omw== |
|
Replicationdatafor:"Data-drivendecentralizedbreedingincreasesgeneticgaininchallengingcropproductionenvironments" |
|
|
f3814233 Location: |
Variable Format: character Notes: UNF:6:QdV/LlYggPJgxekHXQxVYQ== |
|
f3814237 Location: |
Variable Format: character Notes: UNF:6:5m2Q42z9tWDrqUh8ffrmKg== |
|
f3814237 Location: |
Variable Format: character Notes: UNF:6:rh+dJg7HYeAUkndRyNpOaA== |
|
f3814237 Location: |
Variable Format: character Notes: UNF:6:AYdL3VSmc7/K7zWxSyh85Q== |
|
f3814236 Location: |
Variable Format: character Notes: UNF:6:RMRz3OS7PZ7pc63aQrUbtQ== |
|
f3814236 Location: |
Variable Format: character Notes: UNF:6:hZZSl57L76B+d40nON37Qg== |
|
f3814236 Location: |
Summary Statistics: Mean NaN; Max. NaN; Valid 0.0; Min. NaN; StDev NaN Variable Format: numeric Notes: UNF:6:PnB3/S9m1ongzuanz1s3vw== |
|
f3814235 Location: |
Summary Statistics: Max. 11193.0; Mean 1263.9245972072576; Min. 1.0; StDev 2255.795526304691; Valid 4655.0 Variable Format: numeric Notes: UNF:6:XoatZqu76Rn3+NQfkaopvA== |
|
f3814235 Location: |
Variable Format: character Notes: UNF:6:IO7Evx5Cmlf6xROOfX3Uww== |
|
f3814235 Location: |
Variable Format: character Notes: UNF:6:BEffMZMmZ0X8+Gl7bg2PPg== |
|
f3814235 Location: |
Summary Statistics: Max. 4.0; Mean 2.5007518796992483; StDev 1.1182499227130824; Min. 1.0; Valid 4655.0; Variable Format: numeric Notes: UNF:6:zcCWH4ac5u8woEreTKM4Cw== |
|
f3814235 Location: |
Summary Statistics: StDev 0.6506344679879326; Max. 2015.0; Mean 2014.1334049409238; Min. 2013.0; Valid 4655.0; Variable Format: numeric Notes: UNF:6:LHHpSiOEsotJh/jivnCURQ== |
|
f3814235 Location: |
Variable Format: character Notes: UNF:6:vMU466nXALeHUTs6w4EMHw== |
|
f3814235 Location: |
Summary Statistics: StDev 0.19576063557314852; Valid 4655.0; Max. 39.28; Mean 39.023715359828145; Min. 38.582 Variable Format: numeric Notes: UNF:6:/M4Cur0pggz62It9A0yEvQ== |
|
f3814235 Location: |
Summary Statistics: StDev 1.732802352060311; Max. 13.663; Mean 11.343350375939842; Min. 8.721; Valid 4655.0; Variable Format: numeric Notes: UNF:6:bj/sD0x+/8oqiegu2UYMxg== |
|
f3814235 Location: |
Summary Statistics: StDev 173.44176171781268; Valid 4260.0; Mean 249.9001814358391; Min. 0.0; Max. 883.333333333333; Variable Format: numeric Notes: UNF:6:RfOjVwbveCJptMDAWyKYNQ== |
|
f3814235 Location: |
Summary Statistics: Valid 4655.0; Max. 4.0; Mean 2.5001074113856068; Min. 1.0; StDev 1.1182501703790377; Variable Format: numeric Notes: UNF:6:awAThiqww7MdYWg5vxojTg== |
|
f3814235 Location: |
Summary Statistics: Valid 4655.0; StDev 237.3538027763315; Max. 42217.0; Min. 41487.0; Mean 41901.37250268528 Variable Format: numeric Notes: UNF:6:Rws5RwkHfQMfqKh3OrqHjw== |
|
f3814235 Location: |
Summary Statistics: Max. 1.6; Min. 0.4; Mean 1.4242749731471527; StDev 0.29681627076232375; Valid 4655.0 Variable Format: numeric Notes: UNF:6:voQMFO2Pl9DjBEC6f1CSvA== |
|
f3814235 Location: |
Summary Statistics: Valid 0.0; Min. NaN; Max. NaN; StDev NaN; Mean NaN Variable Format: numeric Notes: UNF:6:Slm2EXboX4oPnru96c+Asw== |
|
f3814234 Location: |
Variable Format: character Notes: UNF:6:EoX+DYc8vpch3giDeyRXCg== |
|
Replicationdatafor:"Data-drivendecentralizedbreedingincreasesgeneticgaininchallengingcropproductionenvironments" |
|
|
f3814234 Location: |
Variable Format: character Notes: UNF:6:nl0agI4pJfG6LzKQ41c7Vg== |
|
Label: |
diversity.panel.data.gp.rda |
|
Notes: |
application/gzip |
|
Label: |
genotypic.data.durum.wheat.rda |
|
Notes: |
application/x-rlang-transport |
|
Label: |
genoytpic.data.rrBLUP.rda |
|
Notes: |
application/gzip |
|
Label: |
01_add_climate_indices.R |
|
Notes: |
type/x-r-syntax |
|
Label: |
01_add_climate_indices_session_info.txt |
|
Notes: |
text/plain |
|
Label: |
02_PL_model.R |
|
Notes: |
type/x-r-syntax |
|
Label: |
02_PL_model_session_info.txt |
|
Notes: |
text/plain |
|
Label: |
GP_01_get_SNPs_BLUPs_H2.R |
|
Notes: |
type/x-r-syntax |
|
Label: |
GP_02_characterize_environmental_diversity.R |
|
Notes: |
type/x-r-syntax |
|
Label: |
GP_03_derive_log_abilities_by_groups.R |
|
Notes: |
type/x-r-syntax |
|
Label: |
GP_04_perform_genomic_selection.R |
|
Notes: |
type/x-r-syntax |
|
Label: |
GP_05_summarize_outputs_produce_plots.R |
|
Notes: |
type/x-r-syntax |
|
Label: |
helper_00_functions.R |
|
Notes: |
type/x-r-syntax |