Replication Data for: Hypothermia amongst neonatal admissions in Kenya: A Retrospective Cohort Study Assessing Prevalence, Trends, Risk Factors, and its Relationship with All-Cause Neonatal Mortality (doi:10.7910/DVN/VDSUDE)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
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Replication Data for: Hypothermia amongst neonatal admissions in Kenya: A Retrospective Cohort Study Assessing Prevalence, Trends, Risk Factors, and its Relationship with All-Cause Neonatal Mortality

doi:10.7910/DVN/VDSUDE

Harvard Dataverse

2023-10-30

1

Wainaina, John; Ogero, Morris; Mumelo, Livingstone; Wairoto, Kefa; Mbevi, George; Tuti, Timothy; Mwaniki, Paul; Irimu, Grace; English, Mike; Aluvaala, Jalemba; The Clinical Information Network Author Group, 2023, "Replication Data for: Hypothermia amongst neonatal admissions in Kenya: A Retrospective Cohort Study Assessing Prevalence, Trends, Risk Factors, and its Relationship with All-Cause Neonatal Mortality", https://doi.org/10.7910/DVN/VDSUDE, Harvard Dataverse, V1, UNF:6:mjZsyi3XOts07bqrJ1m0Cw== [fileUNF]

Replication Data for: Hypothermia amongst neonatal admissions in Kenya: A Retrospective Cohort Study Assessing Prevalence, Trends, Risk Factors, and its Relationship with All-Cause Neonatal Mortality

doi:10.7910/DVN/VDSUDE

Wainaina, John (Health Services Unit, KEMRI-Wellcome Trust Research Programme, Nairobi, Kenya)

Ogero, Morris (Infectious Disease Epidemiology, London School of Hygiene and Tropical Medicine, University of London, UK.)

Mumelo, Livingstone (Health Services Unit, KEMRI-Wellcome Trust Research Programme, Nairobi, Kenya)

Wairoto, Kefa (Health Services Unit, KEMRI-Wellcome Trust Research Programme, Nairobi, Kenya)

Mbevi, George (Health Services Unit, KEMRI-Wellcome Trust Research Programme, Nairobi, Kenya)

Tuti, Timothy (Health Services Unit, KEMRI-Wellcome Trust Research Programme, Nairobi, Kenya)

Mwaniki, Paul (Health Services Unit, KEMRI-Wellcome Trust Research Programme, Nairobi, Kenya)

Irimu, Grace (Health Services Unit, KEMRI-Wellcome Trust Research Programme, Nairobi, Kenya)

English, Mike (Health Services Unit, KEMRI-Wellcome Trust Research Programme, Nairobi, Kenya)

Aluvaala, Jalemba (Health Services Unit, KEMRI-Wellcome Trust Research Programme, Nairobi, Kenya)

The Clinical Information Network Author Group (Health Services Unit, KEMRI-Wellcome Trust Research Programme, Nairobi, Kenya)

Harvard Dataverse

Wainaina, John

The Data Governance Committee

Wainaina, John

2023-10-27

https://doi.org/10.7910/DVN/VDSUDE

Medicine, Health and Life Sciences

<p>This is a replication dataset for the publication titled: "<a href=""></a>Hypothermia amongst neonatal admissions in Kenya: A Retrospective Cohort Study Assessing Prevalence, Trends, Risk Factors, and its Relationship with All-Cause Neonatal Mortality".</a></p> <p>Hypothermia among newborns has reported to increase risk of neonatal mortality. However, these reports have originated from small sampled studies, in small centers and in cross sectional designs. We utilized a large dataset spanning several years collected routinely from 21 different inpatient neonatal units among those born within those hospitals. This data contains `at/during birth` information, examination, diagnoses, treatments, and supportive care and finally discharge information. The objectives were to describe: (i) the burden of hypothermia on admission across 21 newborn units in Kenya, (ii) any trend in prevalence of hypothermia over time, (iii) risk factors for hypothermia at admission, and (iv) hypothermia’s association with inpatient neonatal mortality. The patient level information were analyzed from the `Inpatient Neonatal Dataset.RData`. To explore the role of ambient temperature, we access land surface data as substitutes for the room temperature in the NBU. These land surface temperatures were obtained from MODIS, a satellite source, with a spatial resolution of 1 kilometer (km). Through the Geographical Positioning System (GPS), we acquired the dataset that included daily temperature recordings specifically for the geographical areas of the study hospitals. Further information and specifics regarding the dataset can be found elsewhere (https://ladsweb.modaps.eosdis.nasa.gov/missions-and-measurements/products/MOD11A1). - `surface_data.csv` </p>

Open Access

<p><strong>Data Access: </strong>Open</p>

• Number of cases: 58804

• No. of variables per record: 92

• Type of File: text/tab-separated-values

UNF:6:xPSgaGKw2Z4NkF4Wg1Gl9A==

• Number of cases: 7581

• No. of variables per record: 5

• Type of File: text/tab-separated-values

UNF:6:rkMs2vvZQus6ZiYctZoHJA==

• id - id
• hosp_id - hosp_id
• multiple_delivery - multiple_delivery
• number_delivered - number_delivered
• birth_wt - birth_wt
• child_sex - child_sex
• referred_to_hospital - referred_to_hospital
• mothers_age - mothers_age
• gravity - gravity
• parity_live_birth - parity_live_birth
• parity_abortion - parity_abortion
• maternal_hiv - maternal_hiv
• mother_anten_corti - mother_anten_corti
• maternal_arv_s - maternal_arv_s
• baby_given_arv_s - baby_given_arv_s
• maternal_vdrl - maternal_vdrl
• premature_rapture_of_membr - premature_rapture_of_membr
• rapture_of_membrane - rapture_of_membrane
• mother_fever - mother_fever
• mother_tbtreat - mother_tbtreat
• mother_diabetes - mother_diabetes
• mother_htn - mother_htn
• mother_preeclampsia - mother_preeclampsia
• mother_eclampsia - mother_eclampsia
• is_other_maternal_cond - is_other_maternal_cond
• mother_alive - mother_alive
• gest - gest
• apg_doc - apg_doc
• apgar_1min - apgar_1min
• apgar_5min - apgar_5min
• apgar_10min - apgar_10min
• wt_now - wt_now
• wt_now_units - wt_now_units
• baby_resusc_at_birth - baby_resusc_at_birth
• length - length
• head_circum - head_circum
• bba - bba
• born_where - born_where
• delivery - delivery
• fever - fever
• difficulty_breathing - difficulty_breathing
• diarrhoea - diarrhoea
• difficulty_feeding - difficulty_feeding
• convulsions - convulsions
• level_of_activity - level_of_activity
• apnoea - apnoea
• high_pitched_cry - high_pitched_cry
• temperature_degrees_celciu - temperature_degrees_celciu
• respiratory_rate_rr_per_mi - respiratory_rate_rr_per_mi
• heart_rate_hr_min - heart_rate_hr_min
• oxygen_saturation_measured - oxygen_saturation_measured
• oxygen_saturation - oxygen_saturation
• stirdor - stirdor
• cry - cry
• central_cyanosis - central_cyanosis
• indrawing - indrawing
• grunting - grunting
• air_entry_bilateral - air_entry_bilateral
• crackles - crackles
• cap_refill - cap_refill
• pallor_anaemia - pallor_anaemia
• suck_breastfeed - suck_breastfeed
• bulging_fontanelle - bulging_fontanelle
• irritable - irritable
• eye_pus - eye_pus
• tone - tone
• redced_movement_floppy - redced_movement_floppy
• umbilicus - umbilicus
• skin - skin
• jaundice - jaundice
• glucose - glucose
• glucose_results - glucose_results
• clear_pry_adm_diag - clear_pry_adm_diag
• pry_adm_diag - pry_adm_diag
• adm_diag_1 - adm_diag_1
• adm_diag_2 - adm_diag_2
• adm_diag_3 - adm_diag_3
• other_admission_diag - other_admission_diag
• other_admission_diag_1 - other_admission_diag_1
• other_admission_diag_2 - other_admission_diag_2
• other_admission_diag_3 - other_admission_diag_3
• other_admission_diag_4 - other_admission_diag_4
• other_admission_diag_5 - other_admission_diag_5
• phototherapy - phototherapy
• photo_therapy_on_any_other - photo_therapy_on_any_other
• k_mother_care - k_mother_care
• cpap - cpap
• discharge_weight - discharge_weight
• outcome - outcome
• referred_to - referred_to
• dsc_condition - dsc_condition
• follow_up - follow_up
• hosp_id - hosp_id
• system:index - system:index
• day_temp - day_temp
• night_temp - night_temp
• .geo - .geo

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Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

Notes: UNF:6:hoOl66Pm1rlvMuvowAJT7A==

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Summary Statistics: Mean 2192.4687033873274; Min. -1.0; StDev 29595.72098288397; Valid 58804.0; Max. 6835121.0

Variable Format: numeric

Notes: UNF:6:+Fqy0lNImgqLH8jzcMWv+A==

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Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Summary Statistics: Mean 24.91572387177584; Max. 3918.0; Min. -1.0; Valid 57524.0; StDev 18.498986115835056

Variable Format: numeric

Notes: UNF:6:YEunFYaRSpw+OyChA9HEyw==

f7512188 Location:

Summary Statistics: Mean NaN; Min. NaN; StDev NaN; Max. NaN; Valid 0.0;

Variable Format: numeric

Notes: UNF:6:aHq+OqaUk8pNa7H/akxlpQ==

f7512188 Location:

Summary Statistics: Mean 1.1857569896254783; StDev 1.4001156944684463; Valid 56870.0; Min. -1.0; Max. 40.0

Variable Format: numeric

Notes: UNF:6:Kf/edoRFxLx0C4K2jHiPZg==

f7512188 Location:

Summary Statistics: StDev 0.6170509853028064; Mean 0.1096711798839554; Valid 56870.0; Min. -1.0; Max. 11.0

Variable Format: numeric

Notes: UNF:6:pLl9y6KqmsyJX7CdA7CiSQ==

f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Summary Statistics: Max. NaN; Min. NaN; Mean NaN; StDev NaN; Valid 0.0

Variable Format: numeric

Notes: UNF:6:aHq+OqaUk8pNa7H/akxlpQ==

f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

Notes: UNF:6:zj6zQ5BWaWz+TO4YTEHVNQ==

f7512188 Location:

Summary Statistics: Mean 33.14594217687095; Max. 48.0; Valid 58800.0; StDev 11.037901699593307; Min. -1.0

Variable Format: numeric

Notes: UNF:6:HMTsxST8U/P++2rdw/6cZQ==

f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

Notes: UNF:6:LO91HTSFS50tBKqWtgb+wg==

f7512188 Location:

Summary Statistics: Mean 1538.8682731338304; Max. 35450.0; Valid 58799.0; StDev 1459.0463154675942; Min. -1.0;

Variable Format: numeric

Notes: UNF:6:VD+jEL1v9BuQdSKYP09Yqg==

f7512188 Location:

Variable Format: character

Notes: UNF:6:pt1ZtBPJzaMRT/B2onobBA==

f7512188 Location:

Variable Format: character

Notes: UNF:6:1m6MfiY58gNzMMz6rDtEZg==

f7512188 Location:

Summary Statistics: Max. 150.0; StDev 13.56477340765681; Min. -1.0; Valid 8711.0; Mean 3.3488462863047936;

Variable Format: numeric

Notes: UNF:6:hLpTBNgUOMP9FVaHXXp8UQ==

f7512188 Location:

Summary Statistics: Mean 4.835341457806386; Valid 8698.0; StDev 12.923616961339608; Min. -1.0; Max. 60.5;

Variable Format: numeric

Notes: UNF:6:sv/sbwJZcEStHpx1jmRaCw==

f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Summary Statistics: Valid 0.0; Mean NaN; Min. NaN; StDev NaN; Max. NaN

Variable Format: numeric

Notes: UNF:6:aHq+OqaUk8pNa7H/akxlpQ==

f7512188 Location:

Variable Format: character

Notes: UNF:6:4PJaKdZwihXugWtc80Opog==

f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

Notes: UNF:6:rT2HkLcrml/pmBRykaxiBg==

f7512188 Location:

Summary Statistics: StDev NaN; Mean NaN; Min. NaN; Max. NaN; Valid 0.0

Variable Format: numeric

Notes: UNF:6:aHq+OqaUk8pNa7H/akxlpQ==

f7512188 Location:

Summary Statistics: Min. -1.0; Mean 29.560468872819936; Max. 90.0; Valid 58775.0; StDev 14.49350378878443

Variable Format: numeric

Notes: UNF:6:nrF5q0pd1ZVhzX6jxqj0Lg==

f7512188 Location:

Summary Statistics: Min. -1.0; Valid 56869.0; Max. 174.0; Mean 45.743973869770024; StDev 25.24846063529202;

Variable Format: numeric

Notes: UNF:6:yJsGsA0so0e7eCvIbtqeLw==

f7512188 Location:

Summary Statistics: Max. 2210.0; Mean 114.43182929188073; StDev 53.64378015571881; Valid 56869.0; Min. -1.0;

Variable Format: numeric

Notes: UNF:6:idiXSXL/7hqXZ0CYg4P2SA==

f7512188 Location:

Variable Format: character

Notes: UNF:6:qe+dA9Te5PwQT8UL0OwLEw==

f7512188 Location:

Summary Statistics: Max. 9346.0; Valid 46677.0; Min. -1.0; Mean 92.85935128650084; StDev 57.37355799444036;

Variable Format: numeric

Notes: UNF:6:ZbsbneyOstuWnJcojMiz8w==

f7512188 Location:

Summary Statistics: Mean NaN; Max. NaN; Min. NaN; StDev NaN; Valid 0.0

Variable Format: numeric

Notes: UNF:6:aHq+OqaUk8pNa7H/akxlpQ==

f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

Notes: UNF:6:An0/pQNp8X4x+8dRGsCM/g==

f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Summary Statistics: Min. NaN; Max. NaN; StDev NaN; Valid 0.0; Mean NaN;

Variable Format: numeric

Notes: UNF:6:aHq+OqaUk8pNa7H/akxlpQ==

f7512188 Location:

Variable Format: character

Notes: UNF:6:GeOvtaRfWPx+Cma+8pMu3A==

f7512188 Location:

Summary Statistics: Valid 0.0; StDev NaN; Max. NaN; Min. NaN; Mean NaN

Variable Format: numeric

Notes: UNF:6:aHq+OqaUk8pNa7H/akxlpQ==

f7512188 Location:

Variable Format: character

Notes: UNF:6:Zct4CFrO/jE0OJsq03QBNA==

f7512188 Location:

Summary Statistics: Valid 0.0; Mean NaN; StDev NaN; Max. NaN; Min. NaN

Variable Format: numeric

Notes: UNF:6:aHq+OqaUk8pNa7H/akxlpQ==

f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Summary Statistics: StDev 4.655623011992219; Valid 28244.0; Min. -14.0; Max. 406.0; Mean 3.8385554454043413;

Variable Format: numeric

Notes: UNF:6:8YlKtT8yQ9cXEjYkimkExg==

f7512188 Location:

Variable Format: character

Notes: UNF:6:lgIVnyQVh2if+4qbE+/jew==

f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

Notes: UNF:6:aGb7BAJ3h32g+hAiXsFYQg==

f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Summary Statistics: Mean 1874.9240101194164; Min. -3195.0; StDev 3640.472953223919; Valid 58788.0; Max. 626848.0

Variable Format: numeric

Notes: UNF:6:ItT1LtQYqwou593dl5ZyyQ==

f7512188 Location:

Variable Format: character

Notes: UNF:6:a+el+NnzPycZkPW/ENJ+zw==

f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

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f7512188 Location:

Variable Format: character

Notes: UNF:6:JW3XDSl3/O38SYy189QSkA==

f7512176 Location:

Variable Format: character

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f7512176 Location:

Variable Format: character

Notes: UNF:6:QrZwBeK8EHgiIFgOQ2sWrA==

f7512176 Location:

Summary Statistics: Valid 7581.0; Max. 16010.21842; StDev 254.75769490254456; Min. 14345.0; Mean 15177.111028819416;

Variable Format: numeric

Notes: UNF:6:lz8jMGdihIUWc4p7lO5AAQ==

f7512176 Location:

Summary Statistics: Min. 13174.0; Mean 14432.96295020314; Valid 7581.0; Max. 14838.0; StDev 161.75232615075396

Variable Format: numeric

Notes: UNF:6:e8ANsyVii3kQqMU9ssxaLg==

f7512176 Location:

Variable Format: character

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Label:

01_data_munging.R

type/x-r-syntax

Label:

02_descriptive.R

type/x-r-syntax

Label:

03_risk_models.R

type/x-r-syntax

Label:

Hypothermia Study - Data_Codebook.pdf

application/pdf

Label:

Hypothermia Study - Data_Readme.txt

text/plain