Replication Data for: Surveillance of respiratory viruses at health facilities from across Kenya, 2014 (doi:10.7910/DVN/VFCZN4)

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Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
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Replication Data for: Surveillance of respiratory viruses at health facilities from across Kenya, 2014

doi:10.7910/DVN/VFCZN4

Harvard Dataverse

2022-05-17

7

Murunga, Nickson; Nyawanda, Bryan; Nyiro, Joyce U.; Otieno, Grieven P.; Kamau, Everlyn; Agoti, Charles N.; Lewa, Clement; Gichuki, Alex; Mutunga, Martin; Otieno, Nancy; Mayieka, Lilian; Ochieng, Melvin; Kikwai, Gilbert; Hunsperger, Elizabeth; Onyango, Clayton; Emukule, Gideon; Bigogo, Godfrey; Verani, Jennifer R.; Chaves, Sandra S.; Nokes, David James; Munywoki, Patrick K., 2022, "Replication Data for: Surveillance of respiratory viruses at health facilities from across Kenya, 2014", https://doi.org/10.7910/DVN/VFCZN4, Harvard Dataverse, V7, UNF:6:ek1fu3CwyMKIiLVkPQPC8Q== [fileUNF]

Replication Data for: Surveillance of respiratory viruses at health facilities from across Kenya, 2014

doi:10.7910/DVN/VFCZN4

Murunga, Nickson (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Nyawanda, Bryan (KEMRI-Centre for Global Health Research, Kisumu, Kenya)

Nyiro, Joyce U. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Otieno, Grieven P. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Kamau, Everlyn (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Agoti, Charles N. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Lewa, Clement (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Gichuki, Alex (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Mutunga, Martin (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Otieno, Nancy (KEMRI-Centre for Global Health Research, Kisumu, Kenya)

Mayieka, Lilian (KEMRI-Centre for Global Health Research, Kisumu, Kenya)

Ochieng, Melvin (KEMRI-Centre for Global Health Research, Kisumu, Kenya)

Kikwai, Gilbert (KEMRI-Centre for Global Health Research, Kisumu, Kenya)

Hunsperger, Elizabeth (Centers of Disease Control and Prevention, Centres for Global Health, Division of Global Health Protection, Nairobi, Kenya)

Onyango, Clayton (Centers of Disease Control and Prevention, Centres for Global Health, Division of Global Health Protection, Nairobi, Kenya)

Emukule, Gideon (Centers of Disease Control and Prevention, Centres for Global Health, Division of Global Health Protection, Nairobi, Kenya)

Bigogo, Godfrey (EMRI-Centre for Global Health Research, Kisumu, Kenya)

Verani, Jennifer R. (Centers of Disease Control and Prevention, Centres for Global Health, Division of Global Health Protection, Nairobi, Kenya)

Chaves, Sandra S. (Centers of Disease Control and Prevention, Centres for Global Health, Division of Global Health Protection, Nairobi, Kenya)

Nokes, David James (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; ; School of Life Sciences and Zeeman Institute for Systems Biology and Infectious Disease Epidemiology Research (SBIDER), University of Warwick, Coventry, UK)

Munywoki, Patrick K. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; Centers of Disease Control and Prevention, Centres for Global Health, Division of Global Health Protection, Nairobi, Kenya)

Harvard Dataverse

Murunga, Nickson

Munywoki, Patrick K.

The Data Governance Committee

Murunga, Nickson

2022-04-28

https://doi.org/10.7910/DVN/VFCZN4

Medicine, Health and Life Sciences, Respiratory viruses, Human rhinoviruses, Respiratory syncytial viruses, Influenza viruses, Endemic human coronaviruses, Adenoviruses, Surveillance, Multiplex RT-PCR, Nasopharyngeal swab, Oropharyngeal swab, Kenya

<p>This is a replication dataset for the manuscript titled: "<a href="">Surveillance of respiratory viruses at health facilities from across Kenya, 2014</a>."</p> <p>These data originated from surveillance carried out in 11 sites across Kenya. It contains patients' demographics and clinical features, samples tested, samples positive, respiratory virus targets, years and months of sample collection.</p>

<p><strong>Data Access: </strong>Open</p> <p>Access to these data requires submission of a formal request for consideration by our Data Governance Committee. </p> <strong>How to request</strong> <ol> <li>Download and complete the <a href="https://kemri-wellcome.org/zp-content/uploads/2021/02/KWTRP_Dataverse_Data_Request_Form_2019.docx"><strong>data request form</strong></a></li> <li> Email completed data request form to the Data Governance Committee at <a href="mailto:dgc@kemri-wellcome.org?cc=lmwango@kemri-wellcome.org?Subject=Data%20Access%20Request"><strong>dgc@kemri-wellcome.org</strong></a> </li> </ol> <p><strong>License: </strong><a href="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</a> <a href="https://creativecommons.org/licenses/by/4.0/legalcode"><img src="https://i.creativecommons.org/l/by/3.0/88x31.png"> </a></p>

<p>Publications based on this data collection should acknowledge this source by means of bibliographic citation.</p>

For access to data and more detailed information beyond the metadata and documentation provided, please send a signed data request form to [<a href="mailto:dgc@kemri-wellcome.org">dgc@kemri-wellcome.org</a> ]. <strong> <a href="https://kemri-wellcome.org/zp-content/uploads/2021/02/KWTRP_Dataverse_Data_Request_Form_2019.docx">Click to download Data Request Form</a></strong>

• Number of cases: 5451

• No. of variables per record: 50

• Type of File: text/tab-separated-values

UNF:6:uK57EwnYR/qhZmeXRDJWkg==

• Number of cases: 5451

• No. of variables per record: 50

• Type of File: text/tab-separated-values

UNF:6:gdslNsdHP6Du6GaNKaZ9pA==

• id - group(sampleid)
• adenovirus - Adeno
• e229 - 2 ct_value
• nl63 - 8 ct_value
• oc43 - 9 ct_value
• rhino - 14 ct_value
• rsva - 15 ct_value
• rsvb - 16 ct_value
• flua - 3 ct_value
• flub - 4 ct_value
• fluc - 5 ct_value
• piv1 - 10 ct_value
• piv2 - 11 ct_value
• piv3 - 12 ct_value
• piv4 - 13 ct_value
• tested
• age_yrs
• agegps
• malesex
• cough_bin
• dib
• runnynose_bin
• nasalflaring_bin
• chestindrawing_bin
• wheeze_bin
• lethargic_bin
• rsvapos
• rsvbpos
• rsvabpos
• adenopos
• rhinopos
• e229pos
• oc43pos
• nl63pos
• coronapos
• fluapos
• flubpos
• flucpos
• fluabpos
• piv1pos
• piv2pos
• piv3pos
• piv4pos
• anyviruspos
• Anyviruspos
• Negative
• months
• hospital_type
• year
• month
• id - id
• adenovirus - adenovirus
• e229 - e229
• nl63 - nl63
• oc43 - oc43
• rhino - rhino
• rsva - rsva
• rsvb - rsvb
• flua - flua
• flub - flub
• fluc - fluc
• piv1 - piv1
• piv2 - piv2
• piv3 - piv3
• piv4 - piv4
• tested - tested
• age_yrs - age_yrs
• agegps - agegps
• malesex - malesex
• cough_bin - cough_bin
• dib - dib
• runnynose_bin - runnynose_bin
• nasalflaring_bin - nasalflaring_bin
• chestindrawing_bin - chestindrawing_bin
• wheeze_bin - wheeze_bin
• lethargic_bin - lethargic_bin
• rsvapos - rsvapos
• rsvbpos - rsvbpos
• rsvabpos - rsvabpos
• adenopos - adenopos
• rhinopos - rhinopos
• e229pos - e229pos
• oc43pos - oc43pos
• nl63pos - nl63pos
• coronapos - coronapos
• fluapos - fluapos
• flubpos - flubpos
• flucpos - flucpos
• fluabpos - fluabpos
• piv1pos - piv1pos
• piv2pos - piv2pos
• piv3pos - piv3pos
• piv4pos - piv4pos
• anyviruspos - anyviruspos
• Anyviruspos - Anyviruspos
• Negative - Negative
• months - months
• hospital_type - hospital_type
• year - year
• month - month

f6356593 Location:

Summary Statistics: Mean 2725.261236470477; Valid 5451.0; StDev 1573.3782128699413; Min. 1.0; Max. 5450.0

Variable Format: numeric

Notes: UNF:6:i0H+hUWy0Jx1w9buh5Ntfw==

f6356593 Location:

Summary Statistics: Valid 5451.0; StDev 6.41017343006006; Max. 39.793106079102; Min. 0.0; Mean 1.6465894131895962

Variable Format: numeric

Notes: UNF:6:0L0ph7Ez30FjxlEPck6TjQ==

f6356593 Location:

Summary Statistics: Min. 0.0; Mean 0.12427172809565776; Valid 5450.0; StDev 1.9383103707501328; Max. 38.729301452637

Variable Format: numeric

Notes: UNF:6:fOyD9/YkJROBHNb59La7Cw==

f6356593 Location:

Summary Statistics: Min. 0.0; StDev 7.286006284860162; Valid 5450.0; Max. 39.981582641602; Mean 1.5974788105816073

Variable Format: numeric

Notes: UNF:6:EJraAyyeziPGU5lBkci0pw==

f6356593 Location:

Summary Statistics: Valid 5450.0; Min. 0.0; Max. 34.659648895264; Mean 0.5081047131599649; StDev 3.6418102778656767;

Variable Format: numeric

Notes: UNF:6:6k/ryTH05lDF29Iv5HzLUA==

f6356593 Location:

Summary Statistics: Min. 0.0; Mean 6.167372731369936; Max. 39.972026824951; Valid 5451.0; StDev 12.515469232096214;

Variable Format: numeric

Notes: UNF:6:j0idPIpkY00kxmMOtphSNw==

f6356593 Location:

Summary Statistics: Min. 0.0; Max. 37.274169921875; Valid 5451.0; Mean 1.289162898759113; StDev 5.684698428886337

Variable Format: numeric

Notes: UNF:6:2dojhUDH483JicPJeDp6Ew==

f6356593 Location:

Summary Statistics: StDev 5.842087556941751; Valid 5451.0; Max. 39.837940216064; Mean 1.4177980645165136; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:Tbv0xd5PT+NbVyOaApl1NQ==

f6356593 Location:

Summary Statistics: Mean 9.669227491956253; Valid 1090.0; Min. 0.0; Max. 44.7; StDev 13.745344611513092

Variable Format: numeric

Notes: UNF:6:zfPin7AzSeSrkMfh3J3cVg==

f6356593 Location:

Summary Statistics: Mean 1.1011258278145681; Valid 755.0; Max. 37.8; Min. 0.0; StDev 5.222930966614851

Variable Format: numeric

Notes: UNF:6:EcVWZb0DzmWi93gu1K7miQ==

f6356593 Location:

Summary Statistics: Max. 32.880447387695; Mean 0.13796286510197586; Valid 721.0; StDev 1.8869481686548828; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:adzUfibRSLnV08sKaOBNdQ==

f6356593 Location:

Summary Statistics: Valid 727.0; Min. 0.0; Max. 33.001705169678; StDev 2.064675537161889; Mean 0.13278822656183004

Variable Format: numeric

Notes: UNF:6:zZ+196LNRemhG2peKWd4Ig==

f6356593 Location:

Summary Statistics: StDev 4.8255552102856205; Mean 0.6526580134257082; Min. 0.0; Valid 722.0; Max. 38.214855194092;

Variable Format: numeric

Notes: UNF:6:QI9rtjYHWPVDWGYKHkoTyg==

f6356593 Location:

Summary Statistics: Min. 0.0; StDev 4.706578262654102; Mean 0.7629932921348852; Valid 722.0; Max. 39.432678222656

Variable Format: numeric

Notes: UNF:6:3waUUtrPwmPEhcpu5zgZ1g==

f6356593 Location:

Summary Statistics: Min. 0.0; Valid 722.0; Mean 0.2645377610859115; StDev 2.9017391533380557; Max. 36.489929199219

Variable Format: numeric

Notes: UNF:6:HAbsWfToZfHsPAG7DKHmDQ==

f6356593 Location:

Summary Statistics: Mean 1.0; Max. 1.0; StDev 0.0; Min. 1.0; Valid 5451.0

Variable Format: numeric

Notes: UNF:6:yG3KX2eFtf06bjSsHoalaw==

f6356593 Location:

Summary Statistics: Min. 0.0; Mean 6.913479295119171; StDev 13.570449557244563; Max. 92.0; Valid 5451.0

Variable Format: numeric

Notes: UNF:6:ef6jV4Ki8gXo6vFQpaNkZw==

f6356593 Location:

Summary Statistics: Valid 5451.0; StDev 8.80652735488379; Max. 45.0; Mean 4.204366171344627; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:O8Ne//hfW9rMCJdSMPR5lw==

f6356593 Location:

Summary Statistics: StDev 0.4994091186953391; Max. 1.0; Mean 0.5252247294074466; Min. 0.0; Valid 5451.0

Variable Format: numeric

Notes: UNF:6:QOJqIm8YFLm25dR8ROe5FQ==

f6356593 Location:

Summary Statistics: Mean 0.9323059988992811; StDev 0.25124311614794415; Valid 5451.0; Max. 1.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:MZNv9Q5VQojKRNcwqDNYeg==

f6356593 Location:

Summary Statistics: Valid 5451.0; Max. 1.0; Min. 0.0; Mean 0.2852687580260409; StDev 0.45158377386713255;

Variable Format: numeric

Notes: UNF:6:MfSk1r4+DE4OikRWMWWWsA==

f6356593 Location:

Summary Statistics: StDev 0.47131787377392387; Mean 0.3329664281783147; Valid 5451.0; Min. 0.0; Max. 1.0;

Variable Format: numeric

Notes: UNF:6:3G2DOvFSaRD8eeJRjkV6rg==

f6356593 Location:

Summary Statistics: StDev 0.406203090736543; Min. 0.0; Mean 0.2084021280499007; Max. 1.0; Valid 5451.0

Variable Format: numeric

Notes: UNF:6:NC0DLmr+PkhiOgj7mwDm1A==

f6356593 Location:

Summary Statistics: Max. 1.0; Min. 0.0; Valid 5451.0; Mean 0.23426894147863042; StDev 0.4235798857167618;

Variable Format: numeric

Notes: UNF:6:TnI7r/90QOSLMwxJ2yRXAQ==

f6356593 Location:

Summary Statistics: Min. 0.0; Max. 1.0; Mean 0.06164006604292872; Valid 5451.0; StDev 0.24052272501671754

Variable Format: numeric

Notes: UNF:6:kwB+hgxYUt5sp2p8h3nxxA==

f6356593 Location:

Summary Statistics: Min. 0.0; Mean 0.09356081452944669; StDev 0.29124345394540085; Max. 1.0; Valid 5451.0

Variable Format: numeric

Notes: UNF:6:+/CXaIdgKAIkjFJFM2CbVg==

f6356593 Location:

Summary Statistics: Valid 5451.0; Max. 1.0; Min. 0.0; StDev 0.2162328434401151; Mean 0.04916529077233497;

Variable Format: numeric

Notes: UNF:6:8VBnuRKZlVPZ/36Li5Y1jw==

f6356593 Location:

Summary Statistics: Max. 1.0; Min. 0.0; Valid 5451.0; Mean 0.055586130985140064; StDev 0.22914175825949898

Variable Format: numeric

Notes: UNF:6:qw9MW1wJNAPek81QeLGTMA==

f6356593 Location:

Summary Statistics: StDev 0.30602400144745134; Mean 0.10456796917996636; Min. 0.0; Max. 1.0; Valid 5451.0;

Variable Format: numeric

Notes: UNF:6:go3kzt25cOb2o41otngDhg==

f6356593 Location:

Summary Statistics: Mean 0.06035589800036692; StDev 0.23816689451652914; Min. 0.0; Max. 1.0; Valid 5451.0;

Variable Format: numeric

Notes: UNF:6:cKECFEXJycfDY8dHyHrmHQ==

f6356593 Location:

Summary Statistics: Mean 0.16951018161805204; Max. 1.0; StDev 0.37523633951504604; Min. 0.0; Valid 5451.0

Variable Format: numeric

Notes: UNF:6:ryB44fa6U++FBBM/5ChwDQ==

f6356593 Location:

Summary Statistics: Mean 0.0036697247706422944; Min. 0.0; Max. 1.0; StDev 0.06047254655524156; Valid 5450.0

Variable Format: numeric

Notes: UNF:6:KwLYjR4imAMGru8n41yh6w==

f6356593 Location:

Summary Statistics: StDev 0.13874834797536295; Valid 5450.0; Max. 1.0; Min. 0.0; Mean 0.01963302752293582

Variable Format: numeric

Notes: UNF:6:j5re3h6jiej7Zy4QvDB8Cg==

f6356593 Location:

Summary Statistics: Valid 5450.0; Max. 1.0; Mean 0.01871559633027517; Min. 0.0; StDev 0.1355311520894715

Variable Format: numeric

Notes: UNF:6:HdvPIpEaCSvEANi6bACXzg==

f6356593 Location:

Summary Statistics: Max. 1.0; Min. 0.0; StDev 0.20064943108408798; Valid 5450.0; Mean 0.042018348623853105;

Variable Format: numeric

Notes: UNF:6:phUZ02a/ZeWEmEb3OW68wg==

f6356593 Location:

Summary Statistics: Min. 0.0; StDev 0.272703365639038; Max. 1.0; Mean 0.0808929428708584; Valid 4166.0

Variable Format: numeric

Notes: UNF:6:iII08S0s0Oi/xqJyYTo7Xw==

f6356593 Location:

Summary Statistics: Mean 0.008651766402307021; StDev 0.09262275691449429; Max. 1.0; Valid 4161.0; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:t4kF6ULNcEZZWFfXXOc2Zg==

f6356593 Location:

Summary Statistics: Valid 721.0; Mean 0.005547850208044385; Max. 1.0; Min. 0.0; StDev 0.07432855551879632;

Variable Format: numeric

Notes: UNF:6:OZ4y90sqrMUysZL5B+/nmw==

f6356593 Location:

Summary Statistics: StDev 0.28256961974423916; Valid 4161.0; Mean 0.08747897140110605; Min. 0.0; Max. 1.0;

Variable Format: numeric

Notes: UNF:6:f9pF6NiEWFX0A/nl0aleKw==

f6356593 Location:

Summary Statistics: Mean 0.004126547455295725; StDev 0.064149665283381; Min. 0.0; Max. 1.0; Valid 727.0

Variable Format: numeric

Notes: UNF:6:8zGcWH1nTdeiT8YB9OWWtA==

f6356593 Location:

Summary Statistics: Max. 1.0; Mean 0.002770083102493088; Min. 0.0; Valid 722.0; StDev 0.052595067268365985

Variable Format: numeric

Notes: UNF:6:qWKNtvXhduYP8VrJnqr1Bw==

f6356593 Location:

Summary Statistics: Min. 0.0; Valid 722.0; Max. 1.0; StDev 0.15173395850379404; Mean 0.023545706371191077

Variable Format: numeric

Notes: UNF:6:ucvFYSZYEBx3TQ7Kyga5ew==

f6356593 Location:

Summary Statistics: Max. 1.0; Mean 0.006925207756232678; StDev 0.08298667206811945; Valid 722.0; Min. 0.0

Variable Format: numeric

Notes: UNF:6:xcycLn6x+z9u+itX+ST3kQ==

f6356593 Location:

Summary Statistics: Mean 0.40231150247661146; Max. 1.0; StDev 0.49040909248735376; Min. 0.0; Valid 5451.0;

Variable Format: numeric

Notes: UNF:6:7nRjCrUM6ltxqCnBZXwg1A==

f6356593 Location:

Summary Statistics: Min. 0.0; Mean 0.40231150247661146; Valid 5451.0; StDev 0.49040909248735376; Max. 1.0;

Variable Format: numeric

Notes: UNF:6:7nRjCrUM6ltxqCnBZXwg1A==

f6356593 Location:

Summary Statistics: StDev 0.49040909248735376; Valid 5451.0; Max. 1.0; Mean 0.5976884975233885; Min. 0.0

Variable Format: numeric

Notes: UNF:6:QvdIQbrQI7eGQiybRHJOKA==

f6356593 Location:

Summary Statistics: Valid 5451.0; Mean 5.978719501008996; Min. 1.0; StDev 3.395397085643428; Max. 12.0

Variable Format: numeric

Notes: UNF:6:K27q47X8CBXl21xJlip3AQ==

f6356593 Location:

Summary Statistics: Max. 2.0; Valid 5451.0; StDev 0.440044402769608; Mean 1.7374793615850403; Min. 1.0

Variable Format: numeric

Notes: UNF:6:uJLiyn0JuF97Zcka5xXr4Q==

f6356593 Location:

Summary Statistics: Mean 2014.0; Min. 2014.0; Max. 2014.0; Valid 5451.0; StDev 0.0

Variable Format: numeric

Notes: UNF:6:pKL2PEkRwNR1N6ZqUhxCzA==

f6356593 Location:

Summary Statistics: Mean 5.978719501008996; Valid 5451.0; Min. 1.0; Max. 12.0; StDev 3.395397085643428;

Variable Format: numeric

Notes: UNF:6:K27q47X8CBXl21xJlip3AQ==

f6356592 Location:

Summary Statistics: StDev 1573.3782128699413; Max. 5450.0; Min. 1.0; Valid 5451.0; Mean 2725.261236470477

Variable Format: numeric

Notes: UNF:6:i0H+hUWy0Jx1w9buh5Ntfw==

f6356592 Location:

Summary Statistics: Min. 0.0; Valid 5451.0; Max. 39.793106079102; Mean 1.6465894131895962; StDev 6.41017343006006;

Variable Format: numeric

Notes: UNF:6:0L0ph7Ez30FjxlEPck6TjQ==

f6356592 Location:

Summary Statistics: Valid 5450.0; StDev 1.9383103707501328; Max. 38.729301452637; Mean 0.12427172809565776; Min. 0.0

Variable Format: numeric

Notes: UNF:6:fOyD9/YkJROBHNb59La7Cw==

f6356592 Location:

Summary Statistics: Min. 0.0; Mean 1.5974788105816073; StDev 7.286006284860162; Valid 5450.0; Max. 39.981582641602

Variable Format: numeric

Notes: UNF:6:EJraAyyeziPGU5lBkci0pw==

f6356592 Location:

Summary Statistics: Mean 0.5081047131599649; Min. 0.0; Valid 5450.0; StDev 3.6418102778656767; Max. 34.659648895264

Variable Format: numeric

Notes: UNF:6:6k/ryTH05lDF29Iv5HzLUA==

f6356592 Location:

Summary Statistics: StDev 12.515469232096214; Valid 5451.0; Mean 6.167372731369936; Max. 39.972026824951; Min. 0.0

Variable Format: numeric

Notes: UNF:6:j0idPIpkY00kxmMOtphSNw==

f6356592 Location:

Summary Statistics: StDev 5.684698428886337; Min. 0.0; Mean 1.289162898759113; Max. 37.274169921875; Valid 5451.0

Variable Format: numeric

Notes: UNF:6:2dojhUDH483JicPJeDp6Ew==

f6356592 Location:

Summary Statistics: Max. 39.837940216064; Min. 0.0; StDev 5.842087556941751; Valid 5451.0; Mean 1.4177980645165136

Variable Format: numeric

Notes: UNF:6:Tbv0xd5PT+NbVyOaApl1NQ==

f6356592 Location:

Summary Statistics: StDev 13.745344611513092; Mean 9.669227491956253; Max. 44.7; Min. 0.0; Valid 1090.0;

Variable Format: numeric

Notes: UNF:6:zfPin7AzSeSrkMfh3J3cVg==

f6356592 Location:

Summary Statistics: Valid 755.0; Max. 37.8; StDev 5.222930966614851; Mean 1.1011258278145681; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:EcVWZb0DzmWi93gu1K7miQ==

f6356592 Location:

Summary Statistics: StDev 1.8869481686548828; Min. 0.0; Valid 721.0; Max. 32.880447387695; Mean 0.13796286510197586

Variable Format: numeric

Notes: UNF:6:adzUfibRSLnV08sKaOBNdQ==

f6356592 Location:

Summary Statistics: StDev 2.064675537161889; Mean 0.13278822656183004; Max. 33.001705169678; Valid 727.0; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:zZ+196LNRemhG2peKWd4Ig==

f6356592 Location:

Summary Statistics: Max. 38.214855194092; StDev 4.8255552102856205; Valid 722.0; Min. 0.0; Mean 0.6526580134257082

Variable Format: numeric

Notes: UNF:6:QI9rtjYHWPVDWGYKHkoTyg==

f6356592 Location:

Summary Statistics: Min. 0.0; StDev 4.706578262654102; Valid 722.0; Mean 0.7629932921348852; Max. 39.432678222656

Variable Format: numeric

Notes: UNF:6:3waUUtrPwmPEhcpu5zgZ1g==

f6356592 Location:

Summary Statistics: Valid 722.0; Mean 0.2645377610859115; Max. 36.489929199219; StDev 2.9017391533380557; Min. 0.0;

Variable Format: numeric

Notes: UNF:6:HAbsWfToZfHsPAG7DKHmDQ==

f6356592 Location:

Summary Statistics: Min. 1.0; Max. 1.0; Mean 1.0; Valid 5451.0; StDev 0.0;

Variable Format: numeric

Notes: UNF:6:yG3KX2eFtf06bjSsHoalaw==

f6356592 Location:

Summary Statistics: Valid 5451.0; Max. 92.0; StDev 13.570449556666228; Min. 0.0; Mean 6.913479296191104;

Variable Format: numeric

Notes: UNF:6:fPN3AuDP7ejJbCbYQcJgkA==

f6356592 Location:

Variable Format: character

Notes: UNF:6:7IzMc1gowswh3fMFAu8rBg==

f6356592 Location:

Summary Statistics: Mean 0.5252247294074466; Valid 5451.0; Max. 1.0; Min. 0.0; StDev 0.4994091186953391

Variable Format: numeric

Notes: UNF:6:QOJqIm8YFLm25dR8ROe5FQ==

f6356592 Location:

Variable Format: character

Notes: UNF:6:7n9acRyaKAQiGeJllM4S8g==

f6356592 Location:

Variable Format: character

Notes: UNF:6:kH6MhzV5uNipeXSYV40GYw==

f6356592 Location:

Variable Format: character

Notes: UNF:6:R5ZU3F1ixGI8eaXe1i7hhQ==

f6356592 Location:

Variable Format: character

Notes: UNF:6:M5EL3m4ssAgQh4Gwuj13cg==

f6356592 Location:

Variable Format: character

Notes: UNF:6:BYsMcwJG6mZS80BRQ/UZlg==

f6356592 Location:

Variable Format: character

Notes: UNF:6:lvJJpeBO/s3SWunoCRTbSA==

f6356592 Location:

Variable Format: character

Notes: UNF:6:ro0USJyZb5xg0mFz0PRw2Q==

f6356592 Location:

Variable Format: character

Notes: UNF:6:YrKnSezMQT0CoIU5gaCZ2Q==

f6356592 Location:

Variable Format: character

Notes: UNF:6:PbInjh2hcuy9vj0EFp7+aw==

f6356592 Location:

Variable Format: character

Notes: UNF:6:Bq4s9fA0/ME2zLvu9qMgwg==

f6356592 Location:

Variable Format: character

Notes: UNF:6:VeHL5VowmYRFQh+P4+iGcQ==

f6356592 Location:

Variable Format: character

Notes: UNF:6:8t13oa8yO8xZ/zJ0EG/ogw==

f6356592 Location:

Variable Format: character

Notes: UNF:6:tGF/j0S31KnlgTlwJipIog==

f6356592 Location:

Variable Format: character

Notes: UNF:6:J863rEsDWMVWgjySOkp9zw==

f6356592 Location:

Variable Format: character

Notes: UNF:6:h5KJoKfMcl0MBtpajutppA==

f6356592 Location:

Variable Format: character

Notes: UNF:6:yZhUqrzWJd9RZJxWpcEZaw==

f6356592 Location:

Variable Format: character

Notes: UNF:6:O252feDmg+wHvDexxzk5RA==

f6356592 Location:

Variable Format: character

Notes: UNF:6:QrzGgRBeqWrHq9pl5LL+bQ==

f6356592 Location:

Variable Format: character

Notes: UNF:6:HXRAu8EQbWcDi46931JKEw==

f6356592 Location:

Variable Format: character

Notes: UNF:6:nmeKr/Tj4KtS5yNEPU2n4A==

f6356592 Location:

Variable Format: character

Notes: UNF:6:Xxe7TdLT4OOoFQbjM3i4NQ==

f6356592 Location:

Variable Format: character

Notes: UNF:6:bmZdwirpS/Vv4/5uMa6QXg==

f6356592 Location:

Variable Format: character

Notes: UNF:6:SERIExAopsHSkHmkaF0VgA==

f6356592 Location:

Variable Format: character

Notes: UNF:6:cBiOYd2GM+YkU4+qmLyWAg==

f6356592 Location:

Variable Format: character

Notes: UNF:6:W3BEDiKoWFL2zFo6ETlfjw==

f6356592 Location:

Summary Statistics: Max. 1.0; StDev 0.49040909248735376; Valid 5451.0; Min. 0.0; Mean 0.40231150247661146

Variable Format: numeric

Notes: UNF:6:7nRjCrUM6ltxqCnBZXwg1A==

f6356592 Location:

Summary Statistics: Valid 5451.0; Min. 0.0; StDev 0.49040909248735376; Max. 1.0; Mean 0.5976884975233885

Variable Format: numeric

Notes: UNF:6:QvdIQbrQI7eGQiybRHJOKA==

f6356592 Location:

Summary Statistics: Max. 12.0; Min. 1.0; StDev 3.395397085643428; Valid 5451.0; Mean 5.978719501008996

Variable Format: numeric

Notes: UNF:6:K27q47X8CBXl21xJlip3AQ==

f6356592 Location:

Variable Format: character

Notes: UNF:6:BcFwxf9wZL51Z8246fVygg==

f6356592 Location:

Summary Statistics: StDev 0.0; Max. 2014.0; Mean 2014.0; Min. 2014.0; Valid 5451.0

Variable Format: numeric

Notes: UNF:6:pKL2PEkRwNR1N6ZqUhxCzA==

f6356592 Location:

Summary Statistics: StDev 3.395397085643428; Min. 1.0; Max. 12.0; Valid 5451.0; Mean 5.978719501008996

Variable Format: numeric

Notes: UNF:6:K27q47X8CBXl21xJlip3AQ==

Label:

1_SPRED_Kenya_Descriptive_Analysis_07032021.do

Text:

This STATA code generates baseline baseline characteristics of patients with respiratory symptom from the 11 surveillance sites in Kenya.

application/x-stata-syntax

Label:

2_SPRED_Kenya_Viral_Trends_Site_07032021.do

Text:

This STATA code plots percent virus positive for each of respiratory virus targets for the 11 surveillance sites

application/x-stata-syntax

Label:

3_SPRED_Kenya_Viral_Trends_Region_07032021.do

Text:

This STATA code describes distribution of virus positive for each of respiratory virus targets by regions (Central, Coast, North, Rift Valley, and Western)

application/x-stata-syntax

Label:

Nmurunga_SPRED_Kenya_descriptive_analysis_data_Codebook_V3.pdf

application/pdf

Label:

NMurunga_SRED_Kenya_descriptive_analysis_data_readme.txt

text/plain

Label:

Resp Virus Ciruculation in Kenya Supplementary Figures 06Aug2023_Revised.docx

application/vnd.openxmlformats-officedocument.wordprocessingml.document

Label:

Resp Virus Ciruculation in Kenya Supplementary Figures 06Aug2023_Revised.pdf

application/pdf