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Part 1: Document Description
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Citation |
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Title: |
Replication Data for: Emergence and transmission dynamics of the FY.4 Omicron Subvariant |
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Identification Number: |
doi:10.7910/DVN/VPWUXN |
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Distributor: |
Harvard Dataverse |
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Date of Distribution: |
2024-12-05 |
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Version: |
2 |
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Bibliographic Citation: |
Musundi, Sebastian, 2024, "Replication Data for: Emergence and transmission dynamics of the FY.4 Omicron Subvariant", https://doi.org/10.7910/DVN/VPWUXN, Harvard Dataverse, V2 |
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Citation |
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Title: |
Replication Data for: Emergence and transmission dynamics of the FY.4 Omicron Subvariant |
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Identification Number: |
doi:10.7910/DVN/VPWUXN |
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Authoring Entity: |
Musundi, Sebastian (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Distributor: |
Harvard Dataverse |
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Access Authority: |
Musundi, Sebastian |
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Depositor: |
Musundi, Sebastian |
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Date of Deposit: |
2024-12-05 |
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Holdings Information: |
https://doi.org/10.7910/DVN/VPWUXN |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences, FY.4, Omicron, Phylogenetics, Kenya |
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Abstract: |
<p>This is a replication dataset for the manuscript titled: "<i><strong>Emergence and transmission dynamics of the FY.4 Omicron Subvariant </strong></i>".</p> </p>SARS-CoV-2 FY.4 sequences previously sequenced from KEMRI-Wellcome Trust Research Programme were retrieved together with other FY.4 global sequences sourced from Global Initiative on Sharing All Influenza Data (GISAID).Phylogenetic trees were constructed using maximum likelihood and time-resolved methods. Temporal signals were assessed using the Tempest software, and Bayesian phylogeography was applied to identify viral clades associated with global movement, viral dispersal within Kenya, and to estimate the origin of the variant using BEAST v1.10.4. </p> |
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Kind of Data: |
Open Access |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Notes: |
<a href="http://creativecommons.org/licenses/by/4.0">CC BY 4.0</a> |
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Other Study Description Materials |
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Label: |
Data.zip |
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Notes: |
application/zip |
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Label: |
READme.txt |
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Notes: |
text/plain |
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Label: |
Script.zip |
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Notes: |
application/zip |