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Part 1: Document Description
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Citation |
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Title: |
Replication Data for: Near complete genomes of eight human astroviruses recovered from diarrheal stool samples of hospitalized children in coastal Kenya in 2019 |
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Identification Number: |
doi:10.7910/DVN/VU11AJ |
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Distributor: |
Harvard Dataverse |
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Date of Distribution: |
2021-04-12 |
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Version: |
1 |
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Bibliographic Citation: |
Lambisia, Arnold W.; Phan, My V. T.; de Laurent, Zaydah R.; Cotten, Matthew; Nokes, David James; Agoti, Charles N., 2021, "Replication Data for: Near complete genomes of eight human astroviruses recovered from diarrheal stool samples of hospitalized children in coastal Kenya in 2019", https://doi.org/10.7910/DVN/VU11AJ, Harvard Dataverse, V1, UNF:6:xnvilHsw7YepIDqFDT/WGw== [fileUNF] |
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Citation |
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Title: |
Replication Data for: Near complete genomes of eight human astroviruses recovered from diarrheal stool samples of hospitalized children in coastal Kenya in 2019 |
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Identification Number: |
doi:10.7910/DVN/VU11AJ |
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Authoring Entity: |
Lambisia, Arnold W. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Phan, My V. T. (UK Medical Research Council–Uganda Virus Research Institute; London School of Hygiene and Tropical Medicine Uganda Research Unit, Entebbe, Uganda) |
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de Laurent, Zaydah R. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya) |
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Cotten, Matthew (UK Medical Research Council–Uganda Virus Research Institute; London School of Hygiene and Tropical Medicine Uganda Research Unit, Entebbe, Uganda) |
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Nokes, David James (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; School of Life Sciences and Zeeman Institute (SBIDER), University of Warwick, Coventry, UK) |
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Agoti, Charles N. (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya; School of Health and Human Sciences, Pwani University, Kilifi, Kenya) |
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Other identifications and acknowledgements: |
Murunga, Nickson |
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Grant Number: |
102975,203077 |
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Distributor: |
Harvard Dataverse |
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Access Authority: |
Lambisia, Arnold W. |
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Depositor: |
Lambisia, Arnold W. |
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Date of Deposit: |
2021-04-12 |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences, Human astrovirus, Metagenomics sequencing, Kenya |
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Abstract: |
This is a replication dataset for the publication: "<a href="">Near complete genomes of eight human astroviruses recovered from diarrheal stool samples of hospitalized children in coastal Kenya in 2019</a>.</p> <p>The dataset is part of long-term surveillance of enteric viruses associated with diarrhea among children under 13 years admitted to the KCH study. This dataset contains results of samples positive for human astrovirus by real-time PCR for the period 13th April 2019-23th July 2019. Aside from the samples tested and results of the tests, it also contains the patients’ sociodemographic characteristic, cycle threshold and symptoms (diarrhoea and Vomiting).The dataset is used to generate new HAstVs genome sequences from RT-PCR positive samples collected from children hospitalized with diarrhea in Kilifi Kenya. </p> </p>The raw sequence data were deposited in the Sequence Read Archive (SRA) under BioProject accession number <a href="https://www.ncbi.nlm.nih.gov/bioproject/692787">PRJNA692787</a> and BioSample accession numbers <a href="https://www.ncbi.nlm.nih.gov/biosample/?term=SAMN17370496">SAMN17370496</a> to <a href="https://www.ncbi.nlm.nih.gov/biosample/?term=SAMN17370503">SAMN17370503</a>. The genome sequences generated here were deposited in GenBank under accession numbers <a href="https://www.ncbi.nlm.nih.gov/nuccore/MW485038">MW485038</a> to <a href=https://www.ncbi.nlm.nih.gov/nuccore/MW485045">MW485045</a>. </p> |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Access Authority: |
The Data Governance Committee, Kemri-Wellcome Trust Research Programme, Kilifi, Kenya; dgc@kemri-wellcome.org |
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Citation Requirement: |
<p>Publications based on this data collection should acknowledge this source by means of bibliographic citation.</p> |
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Notes: |
<p>This data is licensed under the <a href="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</a> <a href="https://creativecommons.org/licenses/by/4.0/legalcode"><img src="https://i.creativecommons.org/l/by/3.0/88x31.png"> </a> </p> |
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Other Study Description Materials |
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File Description--f4515173 |
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File: DATA1.tab |
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Notes: |
UNF:6:xnvilHsw7YepIDqFDT/WGw== |
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List of Variables: |
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Variables |
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f4515173 Location: |
Summary Statistics: StDev 3.0276503540974917; Valid 10.0; Min. 1.0; Max. 10.0; Mean 5.5 Variable Format: numeric Notes: UNF:6:H+o4pZdILI8RXAjvwwcvVw== |
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f4515173 Location: |
Variable Format: character Notes: UNF:6:/CqMRuNuhmbjCqH3+A29VQ== |
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f4515173 Location: |
Variable Format: character Notes: UNF:6:7SuKAIcz0jYTJdCjINplrw== |
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f4515173 Location: |
Summary Statistics: Max. 27.0; Mean 17.5; Min. 8.0; StDev 7.412451985979028; Valid 10.0 Variable Format: numeric Notes: UNF:6:PgWFDxdUK/ns5ybV/rsKtA== |
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f4515173 Location: |
Variable Format: character Notes: UNF:6:RT6zBM9JNhn/M8iq62F0oA== |
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f4515173 Location: |
Summary Statistics: Max. 26.28959846; StDev 1.8414908956000318; Valid 10.0; Mean 22.966680718; Min. 19.48098946 Variable Format: numeric Notes: UNF:6:2CyYArW1bOTCpmhr/Fd5iw== |
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f4515173 Location: |
Variable Format: character Notes: UNF:6:uGYrniJXCEyU1PCuIReMHw== |
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f4515173 Location: |
Variable Format: character Notes: UNF:6:hJvLnpiC42ZGL00dfqGZwQ== |
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Label: |
ALambisia_Human_Astroviruses_Data_Codebook.pdf |
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Notes: |
application/pdf |
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Label: |
ALambisia_Human_Astroviruses_Data_Readme.txt |
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Notes: |
text/plain |