Replication Data for: Utility of MALDI-TOF MS for determination of species identity and blood meal sources of primary malaria vectors on the Kenyan coast (doi:10.7910/DVN/VYQFNO)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Part 5: Other Study-Related Materials
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Replication Data for: Utility of MALDI-TOF MS for determination of species identity and blood meal sources of primary malaria vectors on the Kenyan coast

doi:10.7910/DVN/VYQFNO

Harvard Dataverse

2023-02-01

3

Karisa, Jonathan; Ominde, Kelly; Tuwei, Mercy; Bartilol, Brian; Ondieki, Zedekiah; Musani, Harun; Wanjiku, Caroline; Mwikali, Kioko; Babu, Lawrence; Rono, Martin; Eminov, Mumin; Mbogo, Charles; Bejon, Philip; Mwangangi, Joseph; Laroche, Maureen; Maia, Marta, 2023, "Replication Data for: Utility of MALDI-TOF MS for determination of species identity and blood meal sources of primary malaria vectors on the Kenyan coast", https://doi.org/10.7910/DVN/VYQFNO, Harvard Dataverse, V3, UNF:6:QoLvc7/H8dLhBCXE+ecIYw== [fileUNF]

Replication Data for: Utility of MALDI-TOF MS for determination of species identity and blood meal sources of primary malaria vectors on the Kenyan coast

doi:10.7910/DVN/VYQFNO

Karisa, Jonathan (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Ominde, Kelly (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Tuwei, Mercy (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Bartilol, Brian (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Ondieki, Zedekiah (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Musani, Harun (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Wanjiku, Caroline (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Mwikali, Kioko (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Babu, Lawrence (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Rono, Martin (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Eminov, Mumin (Bruker Daltonik GmbH, Bremen, Germany)

Mbogo, Charles (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Bejon, Philip (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Mwangangi, Joseph (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Laroche, Maureen (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Maia, Marta (KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya)

Harvard Dataverse

Karisa, Jonathan

Maia, Marta

The Data Governance Committee

Karisa, Jonathan

2023-02-01

https://doi.org/10.7910/DVN/VYQFNO

Medicine, Health and Life Sciences, MALDI-TOF MS, entomological surveillance, Anopheles, high-throughput, mass spectrometry, Kenya, Coast

<p>This is a replication dataset for the manuscript titled: "<a href="">Utility of MALDI-TOF MS for determination of species identity and blood meal sources of primary malaria vectors on the Kenyan coast</a>", published in the Wellcome Open Research journal.</p> <p>The data files contains results on the evaluation of MALDI-TOF MS as a tool for entomological surveillance by discrimination aganst members An. gambiae and An. funestus complex and their respective blood meal sources. The data obtained was entered into excel sheet for analysis.</p>

Open Access

<p><strong>Data Access: </strong>Open</p> <p><strong>License: </strong><a href="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</a> <a href="https://creativecommons.org/licenses/by/4.0/legalcode"><img src="https://i.creativecommons.org/l/by/3.0/88x31.png"> </a></p>

<p>Publications based on this data collection should acknowledge this source by means of bibliographic citation.</p>

• Number of cases: 2417

• No. of variables per record: 18

• Type of File: text/tab-separated-values

UNF:6:QoLvc7/H8dLhBCXE+ecIYw==

• mos_id - mos_id
• Village - Village
• date_of_collection - date_of_collection
• house_no - house_no
• method_of_collection - method_of_collection
• location - location
• mosq_spp_sl - mosq_spp_sl
• status - status
• species_pcr - species_pcr
• species_maldi - species_maldi
• score - score
• Sequence_ID - Sequence_ID
• Percent_ID - Percent_ID
• Accession_no - Accession_no
• sporozoite_status - sporozoite_status
• BM_ELISA - BM_ELISA
• BM_MALDI - BM_MALDI
• LSV - LSV

f6909624 Location:

Variable Format: character

Notes: UNF:6:Bj7IMi8f+TqNnlgO+uvI7Q==

f6909624 Location:

Variable Format: character

Notes: UNF:6:d/XXB0YijR9xH5Q1g406rg==

f6909624 Location:

Variable Format: character

Notes: UNF:6:yATGkVdUSyMvXqDY18Rzsg==

f6909624 Location:

Variable Format: character

Notes: UNF:6:GpllvhNgFKUG9x2+w3lsyw==

f6909624 Location:

Variable Format: character

Notes: UNF:6:hQMIcsss1kb5PI0uHXpPwQ==

f6909624 Location:

Variable Format: character

Notes: UNF:6:ZG6/gXT7v64WQ+nllD5N9w==

f6909624 Location:

Variable Format: character

Notes: UNF:6:2I+W0CV41q1L9G8omWKzUA==

f6909624 Location:

Variable Format: character

Notes: UNF:6:qpNrVc4Dk+NU3n7X+B8uqg==

f6909624 Location:

Variable Format: character

Notes: UNF:6:Bi0YrWfgArcvErnoXZKkpg==

f6909624 Location:

Variable Format: character

Notes: UNF:6:/2x06/PAvqdmQa+fIQTpQQ==

f6909624 Location:

Summary Statistics: StDev 0.1601717715524877; Mean 2.2996536796536797; Max. 2.67; Valid 1848.0; Min. 1.33

Variable Format: numeric

Notes: UNF:6:6gDceNNdv5BnQ4VVY9AJdg==

f6909624 Location:

Variable Format: character

Notes: UNF:6:Le1GB3kjbSk8g/h2uJua+Q==

f6909624 Location:

Summary Statistics: Mean 98.00331617647059; Max. 100.0; Min. 78.358; StDev 3.5971411852607846; Valid 136.0

Variable Format: numeric

Notes: UNF:6:QNl6pZ8sSYkruwtUwWFkGw==

f6909624 Location:

Variable Format: character

Notes: UNF:6:pm0Jy+Sz+oAwRzEgR7YxHw==

f6909624 Location:

Variable Format: character

Notes: UNF:6:xCtIP0+kECC6QHGyMwEzVw==

f6909624 Location:

Variable Format: character

Notes: UNF:6:wRXdGfpyeMN4XFHEFIlqLw==

f6909624 Location:

Variable Format: character

Notes: UNF:6:WdjKs+bEfH14VxLwPXUaTQ==

f6909624 Location:

Summary Statistics: Valid 187.0; StDev 0.2734125540322395; Mean 2.252994652406417; Min. 1.08; Max. 2.82

Variable Format: numeric

Notes: UNF:6:5WRacvHb3Sq+a4cDRp7krQ==

Label:

Additional file_2.docx

Text:

Show summary of the calculation of weighted LSV of all the samples that had equivocal results

application/vnd.openxmlformats-officedocument.wordprocessingml.document

Label:

Additional file_3.docx

Text:

Provides a summary of sequencing results for the unamplified samples that were sequenced

application/vnd.openxmlformats-officedocument.wordprocessingml.document

Label:

Additional file_4.pptx

Text:

Assessment of Anopheles gambiae and An. funestus complex MS spectra reproducibility using composite correlation index (CCI)

application/vnd.openxmlformats-officedocument.presentationml.presentation

Label:

MALDI-TOF_ MS_ MSPs_Species_ identification 1.zip

application/zip

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Utility of MALDI_TOF MS_Coast_dataset_codebook.pdf

Text:

Contains variable descriptions and formats

application/pdf

Label:

Utility of MALDI_TOF MS_Coast_dataset_Readme.txt

Text:

Contains information on data and related project, and instructions of use

text/plain

Label:

Additional file_1.pptx

application/vnd.openxmlformats-officedocument.presentationml.presentation