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Part 1: Document Description
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Citation |
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Title: |
AllocateMate: An R package for mate allocation. |
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Identification Number: |
doi:10.7910/DVN/Z1PXJJ |
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Distributor: |
Harvard Dataverse |
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Date of Distribution: |
2021-07-13 |
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Version: |
5 |
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Bibliographic Citation: |
Hamilton, Matthew G., 2021, "AllocateMate: An R package for mate allocation.", https://doi.org/10.7910/DVN/Z1PXJJ, Harvard Dataverse, V5 |
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Citation |
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Title: |
AllocateMate: An R package for mate allocation. |
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Identification Number: |
doi:10.7910/DVN/Z1PXJJ |
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Authoring Entity: |
Hamilton, Matthew G. (WorldFish) |
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Producer: |
WorldFish |
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Software used in Production: |
R |
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Distributor: |
Harvard Dataverse |
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Distributor: |
WorldFish |
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Access Authority: |
Hamilton, Matthew G. |
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Depositor: |
WorldFish RDM Team |
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Date of Deposit: |
2021-07-13 |
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Holdings Information: |
https://doi.org/10.7910/DVN/Z1PXJJ |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences, mate allocation, Wright’s inbreeding coefficient, assortative mating, parent selection, genetic improvement, selective breeding program, outcrossing species, fish, tree, livestock |
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Abstract: |
AllocateMate is a R package comprised of two primary functions: allocate.mate.ped and allocate.mate.H. These functions allocate parents to mating pairs based on genetic relationships provided by the user in the form a pedigree file or a relationship matrix (allocate.mate.H). Mating lists are generated (i)that minimise the average Wright’s inbreeding coefficient (F) of offspring, by minimising the average coefficient of coancestry between parents in mating pairs; or (ii) according to assortative mating principles, by maximising the standard deviation of the parental mean EBVs of mating pairs. |
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Kind of Data: |
R Package |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Notes: |
<a href="http://creativecommons.org/licenses/by/4.0">CC BY 4.0</a> |
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Other Study Description Materials |
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Related Publications |
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Citation |
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Title: |
Hamilton, MG. 2021. AllocateMate: An R package for mate allocation. Penang, Malaysia: CGIAR Research Program on Fish Agri-Food Systems. Program Report. |
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Identification Number: |
20.500.12348/4820 |
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Bibliographic Citation: |
Hamilton, MG. 2021. AllocateMate: An R package for mate allocation. Penang, Malaysia: CGIAR Research Program on Fish Agri-Food Systems. Program Report. |
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Label: |
AllocateMate_1.4.tar.gz |
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Notes: |
application/x-gzip |