Replication Data for: Genomic surveillance reveals the spread patterns of SARS-CoV-2 in coastal Kenya during the first two waves

Version 3.0
Agoti, Charles N., 2021, "Replication Data for: Genomic surveillance reveals the spread patterns of SARS-CoV-2 in coastal Kenya during the first two waves", https://doi.org/10.7910/DVN/4ZZYIM, Harvard Dataverse, V3, UNF:6:RL6Vg7q0JyS7YoCkjhHe1A== [fileUNF]
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Description
Subject Medicine, Health and Life Sciences
Keyword COVID-19, SARS-CoV-2
Related Publication Genomic surveillance reveals the spread patterns of SARS-CoV-2 in coastal Kenya during the first two waves Charles N. Agoti, Lynette Isabella Ochola-Oyier, Khadija Said Mohammed, Arnold W. Lambisia, Zaydah R. de Laurent, John M. Morobe, Maureen W. Mburu, Donwilliams O. Omuoyo, Edidah M. Ongera, Leonard Ndwiga, Eric Maitha, Benson Kitole, Thani Suleiman, Mohamed Mwakinangu, John Nyambu, John Otieno, Barke Salim, Jennifer Musyoki, Nickson Murunga, Edward Otieno, John Kiiru, Kadondi Kasera, Patrick Amoth, Mercy Mwangangi, Rashid Aman, Samson Kinyanjui, George Warimwe, My Phan, Ambrose Agweyu, Matthew Cotten, Edwine Barasa, Benjamin Tsofa, D. James Nokes, Philip Bejon, George Githinji medRxiv 2021.07.01.21259583;doi: 10.1101/2021.07.01.21259583
Notes

Data Access: Open

Creative Commons Attribution 4.0 International

Genomic Data Availability: Coastal Kenya genomes have been deposited to both GISAID (Accession numbers: EPI_ISL_1039223-29; EPI_ISL1440075-109, IPI_ISL_457845-931; EPI_ISL_568695-872; EPI_ISL806548-717; EPI_ISL_855494-548; EPI_ISL_968807-9245).

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All_Africa_lineage_report_11Aug2021.tab
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13 Variables, 13372 Observations UNF:6:kp4xiWLP5d3lfZSt+qA3ew==
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annottated_tree_events.csv
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coastal_counties_smoothed.tab
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Published Sep 20, 2021
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8 Variables, 352 Observations UNF:6:w/6knXKJjjJMoWoPHGuu1w==
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Coast_sequences_05Sep2021.aligned.fasta
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Coast_sequences_05Sep2021.fasta
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Coast_sequences_05Sep2021.insertions.tab
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2 Variables, 748 Observations UNF:6:ZESTYUCV3zYYYcH/aDuHWQ==
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coast_sequences_12Aug2021.tab
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2 Variables, 752 Observations UNF:6:b5q6NGD4B17nYQxz5ff+Cg==
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CSV_to_fasta_12Aug2021.py
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daily_summaries_26_Feb_2020.tab
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Published Sep 20, 2021
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52 Variables, 292 Observations UNF:6:nmetVXRJAVQNe/RMx7xbxg==
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exclude.txt
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