Dataset: Census of individual trees of Hacienda San Jose Vichada (2020)

Version 1.2

Ruiz Hurtado, Andres Felipe; Perez Bolanos, Juliana; Arrechea Castillo, Darwin Alexis; Matiz Rubio, Natalia; Costa Junior, Ciniro; Arango Mejia, Jacobo; Cardoso Arango, Juan Andrés, 2024, "Dataset: Census of individual trees of Hacienda San Jose Vichada (2020)", https://doi.org/10.7910/DVN/5TEA8E, Harvard Dataverse, V1

Learn about Data Citation Standards.

Contact Owner

Dataset Metrics

30 Downloads

Description	This dataset contains information of individual trees in Hacienda San Jose (HSJ), Vichada-Colombia extracted from remote sensing imagery processed using AI models. Information from the High Resolution 1-meter Global Canopy Heights map from Meta-AI. The dataset includes a CSV file containing attributes related to tree dimensions and geolocation and a shapefile with polygons representing each tree. Methodology:Tree information was obtained by leveraging the High-Resolution 1 m Global Canopy Height map generated by Meta's AI model, trained on a large dataset of satellite images and LIDAR data, to predict canopy heights with a mean absolute error of 2.8 meters. The map tiles were downloaded from Amazon Web Services (AWS) S3 Bucket and processed using additional steps: merging and clipping tiles to cover the region of interest of Hacienda San Jose, vectorizing, filtering, and georeferencing individual trees to derive attributes like area, perimeter, equivalent diameter, and circularity representing the visual crown of each tree, and finally applying zonal statistics to assign tree height values. The resulting vector layer contains detailed tree metrics, supporting advanced canopy analysis. (2024-11)
Subject	Earth and Environmental Sciences; Agricultural Sciences
Keyword	remote sensing, artificial intelligence, Americas, Crops for Nutrition and Health
License/Data Use Agreement	Custom Dataset Terms

Filter by

	1 to 3 of 3 Files	Original Format Archival Format (.tab)
	01a. readme.md Markdown Text - 2.0 KB Published Nov 22, 2024 10 Downloads MD5: 2030de9e6a8a13a99b93b225cc43907f documentation Documentation	Preview "01a. readme.md" Access File File Access Public Download Options Markdown Text Download Metadata Data File Citation Download EndNote XML Download RIS Download BibTeX
	02a. hsj_trees.tab Tabular Data - 2.5 MB Published Nov 22, 2024 12 Downloads 10 Variables, 17606 Observations UNF:6:2ivdGIx6xXZipnQqdy5BvA== CSV file containing descriptive attributes for each tree. Data	Preview "02a. hsj_trees.tab" Preview "02a. hsj_trees.tab" Access File File Access Public Download Options Comma Separated Values (Original File Format) Tab-Delimited RData Download Metadata DDI Codebook v2 Data File Citation Download EndNote XML Download RIS Download BibTeX Explore Options Data Explorer v2
	03a. hsj_trees.zip Shapefile as ZIP Archive - 2.0 MB Published Nov 22, 2024 8 Downloads MD5: 3458abb091ac0a4def103f1eec868818 Compressed shapefile file containing the shapefile for the tree polygons Data	Access File File Access Public Download Options Shapefile as ZIP Archive Download Metadata Data File Citation Download EndNote XML Download RIS Download BibTeX

Citation Metadata

Persistent Identifier	doi:10.7910/DVN/5TEA8E
Publication Date	2024-11-22
Title	Dataset: Census of individual trees of Hacienda San Jose Vichada (2020)
Author	International Center for Tropical Agriculture - CIAThttps://orcid.org/0000-0003-1293-8736 International Center for Tropical Agriculture - CIAThttps://orcid.org/0009-0008-8076-724X International Center for Tropical Agriculture - CIAThttps://orcid.org/0000-0002-2395-2181 Matiz Rubio, NataliaInternational Center for Tropical Agriculture - CIAT International Center for Tropical Agriculture - CIAThttps://orcid.org/0000-0003-1854-2927 International Center for Tropical Agriculture - CIAThttps://orcid.org/0000-0002-4828-9398 International Center for Tropical Agriculture - CIAThttps://orcid.org/0000-0002-0252-4655
Point of Contact	Use email button above to contact. Alliance Data Management (Bioversity International and the International Center for Tropical Agriculture)
Description	This dataset contains information of individual trees in Hacienda San Jose (HSJ), Vichada-Colombia extracted from remote sensing imagery processed using AI models. Information from the High Resolution 1-meter Global Canopy Heights map from Meta-AI. The dataset includes a CSV file containing attributes related to tree dimensions and geolocation and a shapefile with polygons representing each tree. Methodology:Tree information was obtained by leveraging the High-Resolution 1 m Global Canopy Height map generated by Meta's AI model, trained on a large dataset of satellite images and LIDAR data, to predict canopy heights with a mean absolute error of 2.8 meters. The map tiles were downloaded from Amazon Web Services (AWS) S3 Bucket and processed using additional steps: merging and clipping tiles to cover the region of interest of Hacienda San Jose, vectorizing, filtering, and georeferencing individual trees to derive attributes like area, perimeter, equivalent diameter, and circularity representing the visual crown of each tree, and finally applying zonal statistics to assign tree height values. The resulting vector layer contains detailed tree metrics, supporting advanced canopy analysis. (2024-11)
Subject	Earth and Environmental Sciences; Agricultural Sciences
Keyword	remote sensing (AGROVOC) http://aims.fao.org/aos/agrovoc/c_6498 artificial intelligence (AGROVOC) http://aims.fao.org/aos/agrovoc/c_27064 Americas (Research Region) Crops for Nutrition and Health (Research Lever)
Topic Classification	data collection (AGROVOC) http://aims.fao.org/aos/agrovoc/c_2128 trees (AGROVOC) http://aims.fao.org/aos/agrovoc/c_7887 agroforestry (AGROVOC) http://aims.fao.org/aos/agrovoc/c_207 silvopastoral systems (AGROVOC) http://aims.fao.org/aos/agrovoc/c_16097
Language	English
Producer	International Center for Tropical Agriculture (CIAT) https://ciat.cgiar.org/
Production Date	2024
Funding Information	USA-Bezos Earth Fund though Bioversity International USA, Inc .- Using genetic diversity to capture carbon through deep root systems in tropical soils (Research and Capacity development): A486
Distributor	International Center for Tropical Agriculture (CIAT) https://ciat.cgiar.org/
Depositor	Alliance Data Management
Deposit Date	2024-11-18
Time Period	Start Date: 2018; End Date: 2020
Date of Collection	Start Date: 2018; End Date: 2020
Data Type	Geospatial Data; Interpolated Data; Quantitative Data; Geographic Data
Other Reference	Tolan, J., Yang, H.-I., Nosarzewski, B., Couairon, G., Vo, H.V., Brandt, J., Spore, J., Majumdar, S., Haziza, D., Vamaraju, J., Moutakanni, T., Bojanowski, P., Johns, T., White, B., Tiecke, T., Couprie, C., 2024. Very high resolution canopy height maps from RGB imagery using self-supervised vision transformer and convolutional decoder trained on aerial lidar. Remote Sensing of Environment 300, 113888. https://doi.org/10.1016/j.rse.2023.113888

Geospatial Metadata

Geographic Coverage	Colombia, Vichada
Geographic Bounding Box	-69.68245 -69.48948 6.00112 5.86238

Dataset Terms

License/Data Use Agreement

Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation shown on the dataset page.

Custom Dataset Terms - the following Custom Dataset Terms have been defined for this dataset.

These data and documents are licensed under a Creative Commons Attribution 4.0 International license. You may copy, distribute and transmit the data as long as you acknowledge the source through proper data citation.

Disclaimer

The Alliance of Bioversity International and CIAT (hereinafter "the Alliance"), its partners, and the data authors have exercised utmost care in collecting and compiling the data. However, the data is provided "as is" without any express or implied warranty. Neither the Alliance, its partners, the data authors, nor any relevant funding agencies shall be held liable for any actual, incidental, or consequential damages arising from the use of this data.

By utilizing the Alliance Dataverse, users explicitly acknowledge that the data may contain nonconformities, defects, or errors. No warranty is provided that the data will meet users' needs or expectations, nor that all nonconformities, defects, or errors can or will be corrected.

Users are responsible for verifying the accuracy and suitability of the data for their intended use. It is strongly recommended that users refer to related publications as a baseline for their analysis whenever possible. This practice serves as an additional safeguard against misinterpretation of the data. Related publications are listed in the metadata section of the respective Dataverse study.

Guestbook

The following guestbook will prompt a user to provide additional information when downloading a file.

Alliance Guestbook

	Dataset Version	Summary	Contributors	Published on
No records found.

Edit File

This file has already been deleted (or replaced) in the current version. It may not be edited.

Restrict Access

Restricting limits access to published files. People who want to use the restricted files can request access by default. If you disable request access, you must add information about access to the Terms of Access field.

Learn about restricting files and dataset access in the User Guide.

Request Access

Enable access request

You must enable request access or add terms of access to restrict file access.

Terms of Access for Restricted Files

Save Changes

Edit Embargo

The selected file or files have already been published. Contact an administrator to change the embargo date or reason of the file or files.

Edit Retention Period

The selected file or files have already been published. Contact an administrator to change the retention period date or reason of the file or files.

Delete Files

The file will be deleted after you click on the Delete button.

Files will not be removed from previously published versions of the dataset.

Select File(s)

Please select one or more files.

Share Dataset

Share this dataset on your favorite social media networks.

Continue

Dataset Citations

Citations for this dataset are retrieved from Crossref via DataCite using Make Data Count standards. For more information about dataset metrics, please refer to the User Guide.

Sorry, no citations were found.

Inaccessible Files Selected

The selected file(s) may not be downloaded because you have not been granted access or the file(s) have a retention period that has expired or the files can only be transferred via Globus.

You may request access to any restricted file(s) by clicking the Request Access button.

Ineligible Files Selected

The selected file(s) may not be transferred because you have not been granted access or the file(s) have a retention period that has expired or the files are not Globus accessible.

You may request access to any restricted file(s) by clicking the Request Access button.

Download Options

The files selected are too large to download as a ZIP.

You can select individual files that are below the 15.0 GB download limit from the files table, or use the Data Access API for programmatic access to the files.

Select File(s)

Please select a file or files to be downloaded.

Inaccessible Files Selected

The selected file(s) may not be downloaded because you have not been granted access or the file(s) have a retention period that has expired.

Click Continue to download the files you have access to download.

Ineligible Files Selected

Some file(s) cannot be transferred. (They are restricted, embargoed, with an expired retention period, or not Globus accessible.)

Click Continue to transfer the elligible files.

Delete Dataset

Are you sure you want to delete this dataset and all of its files? You cannot undelete this dataset.

Delete Draft Version

Are you sure you want to delete this draft version? Files will be reverted to the most recently published version. You cannot undelete this draft.

Unpublished Dataset Preview URL

Preview URL can only be used with unpublished versions of datasets.

Unpublished Dataset Preview URL

Are you sure you want to disable the Preview URL? If you have shared the Preview URL with others they will no longer be able to use it to access your unpublished dataset.

Delete Files

The file(s) will be deleted after you click on the Delete button.

Files will not be removed from previously published versions of the dataset.

Compute

This dataset contains restricted files you may not compute on because you have not been granted access.

Deaccession Dataset

Are you sure you want to deaccession? This is permanent and the selected version(s) will no longer be viewable by the public.

Deaccession Dataset

Are you sure you want to deaccession this dataset? This is permanent an it will no longer be viewable by the public.

Version Differences Details

Please select two versions to view the differences.

Version Differences Details

Version:
Last Updated:

Select File(s)

Please select a file or files for access request.

Select File(s)

Embargoed files cannot be accessed. Please select an unembargoed file or files for your access request.

Edit Tags

Select existing file tags or create new tags to describe your files. Each file can have more than one tag.

Request Access

You need to Sign Up or Log In to request access.

Dataset Terms

Please confirm and/or complete the information needed below in order to request access to files in this dataset.

This dataset is made available under the following terms. Please confirm and/or complete the information needed below in order to continue.

License/Data Use Agreement

Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation shown on the dataset page.

Custom terms specific to this dataset Custom Dataset Terms - the following Custom Dataset Terms have been defined for this dataset.

Disclaimer

Name

Institution

Position

Additional Questions

Please briefly describe how you intend to use this data

Preview Guestbook

Upon downloading files the guestbook asks for the following information.

Guestbook Name

Collected Data

Account Information

Package File Download

Use the Download URL in a Wget command or a download manager to download this package file. Download via web browser is not recommended. User Guide - Downloading a Dataverse Package via URL

Download URL

https://qa.dataverse.org/api/access/datafile/

Compute Batch

Clear Batch

Dataset	Persistent Identifier	Change Compute Batch

Compute Batch

Submit for Review

You will not be able to make changes to this dataset while it is in review.

Publish Dataset

Are you sure you want to republish this dataset?

By default datasets are published with the CC0-“Public Domain Dedication” waiver. Learn more about the CC0 waiver here.

To publish with custom Terms of Use, click the Cancel button and go to the Terms tab for this dataset.

Select if this is a minor or major version update.

Minor Release (1.3)

Major Release (2.0)

Publish Dataset

This dataset cannot be published until The Alliance of Bioversity International and CIAT Dataverse is published by its administrator.

Publish Dataset

This dataset cannot be published until The Alliance of Bioversity International and CIAT Dataverse and Harvard Dataverse are published.

Return to Author

Return this dataset to contributor for modification. The reason for return entered below will be sent by email to the author.

Curation Status History

Status	Date	Assigner
No records found.

Add/Edit a Version Note

Styled Citation