Replication Data for: Temporal distribution of rhinovirus types in multiple regions across Kenya over one year, 2014.

Version 2.0
Replication Data for: Temporal distribution of rhinovirus types in multiple regions across Kenya over one year, 2014.
Morobe, John M.; Kamau, Everlyn; Luka, Martha M.; Murunga, Nickson; Lewa, Clement; Mutunga, Martin; Bigogo, Godfrey; Nyawanda, Brian; Onyango, Clayton; Nokes, David James; Agoti, Charles N.; Munywoki, Patrick K., 2024, "Replication Data for: Temporal distribution of rhinovirus types in multiple regions across Kenya over one year, 2014.", https://doi.org/10.7910/DVN/CBHVTA, Harvard Dataverse, V2, UNF:6:sQTYC5N6hrmEF7vFz/tsTQ== [fileUNF]
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Description

This is a replication dataset for the manuscript titled: "Temporal distribution of rhinovirus types in multiple regions across Kenya over one year, 2014".

The dataset comprises demographic and clinical details of patients with acute respiratory illness across different age groups. Data collection spanned from January to December 2014 across three health facility-based respiratory virus surveillance programs in Kenya. It includes Nasopharyngeal (NP) and/or oropharyngeal (OP) swab test results obtained from Respiratory virus rT-RT-PCR screening and sequencing. Rhinovirus VP4/VP2 sequences are accessible on GenBank under accession numbers: MZ129390 - MZ130096. Details of methods and processing are outlined in the associated manuscript.

Subject Medicine, Health and Life Sciences
Keyword rhinovirus, phylogenetics, transmission, spatio-temporal distribution, Kenya
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CC BY 4.0

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JMwita_ Temporal_Distribution_Rhinovirus_data_codebook_v2.pdf
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Published Aug 7, 2024
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MD5: 6dc13d581fa688a7796d9cf01b73f913
DocumentationVariable Codebook/Data Dictionary
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JMwita_ Temporal_Distribution_Rhinovirus_data_Readme.txt
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Published Apr 2, 2024
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DocumentationReadme
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Appendix Table 1.csv
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Published Aug 7, 2024
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DataAppendix Table 1
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Fig3_SPRED-K_metadata_anon.tab
Tabular Data - 30.5 KB
Published Apr 2, 2024
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5 Variables, 798 Observations UNF:6:L+HN3toSdVW5rxAtxGu4Bw==
This data file contains list of all the sample sequenced per site and rhinovirus type detected
Datacsv
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Fig4_SPReD_Kenya_global.tab
Tabular Data - 407.5 KB
Published Apr 2, 2024
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8 Variables, 5251 Observations UNF:6:Q3wP4+MPg0c9ar5pZ/DfPA==
This data file contains the list of all the sample sequenced per site as well as alist global sequenced obtained from Genbank.
Datacsv
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Suppfig1_site_count.txt
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Published Apr 2, 2024
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Datatext file
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Suppfig1_species_site_count.txt
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Published Apr 2, 2024
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Datatext file
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Suppfig2_SPRED-K_metadata_anon.tab
Tabular Data - 23.8 KB
Published Apr 2, 2024
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5 Variables, 798 Observations UNF:6:4KoJ/JISVFwrrQyCrxAQSw==
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Suppfig3_SPRED-K_metadata_anon.tab
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Published Apr 2, 2024
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3 Variables, 798 Observations UNF:6:bq/Mi3BGfLqx43zFxH55XQ==
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Fig3_SPReD-K_temporal_plots_27032024.R
R Syntax - 29.5 KB
Published Apr 2, 2024
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MD5: 31d1ac681ab8548843cd776875b55d96
This r code plots the temporal distribution of all the rhinovirus species in Kenya/site
CodeR script
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