Replication Data for: Temporal Distribution and Clinical Characteristics of the Alpha, Delta and Omicron SARS-CoV-2 Variants of Concern in Laikipia, Kenya: Institutional and Community-Based Genomic Surveillance

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Replication Data for: Temporal Distribution and Clinical Characteristics of the Alpha, Delta and Omicron SARS-CoV-2 Variants of Concern in Laikipia, Kenya: Institutional and Community-Based Genomic Surveillance
Lambisia, Arnold W.; Mudhune,Godfrey H.; Morobe, John M.; Mohammed, Khadija Said; Makori, Timothy N.; Ndwiga, Leonard; Mburu, Maureen W.; Moraa, Edidah O.; Musyoki, Jennifer; Murunga, Nickson; Waliaula, Isaac N.; Mumelo, Arthur K.; Bejon,Philip; Oyier, Isabella Lynette-Ochola; Githinji, George; Nokes, D.James; Agoti, Charles N., 2022, "Replication Data for: Temporal Distribution and Clinical Characteristics of the Alpha, Delta and Omicron SARS-CoV-2 Variants of Concern in Laikipia, Kenya: Institutional and Community-Based Genomic Surveillance", https://doi.org/10.7910/DVN/CCUVR6, Harvard Dataverse, V4, UNF:6:QRSt3EilFzcJf0PplbmS+w== [fileUNF]
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Description

This is a replication dataset for the submitted manuscript titled: "Temporal Distribution and Clinical Characteristics of the Alpha, Delta and Omicron SARS-CoV-2 Variants of Concern in Laikipia, Kenya: Institutional and Community-Based Genomic Surveillance"

This dataset is part of a study that investigated the genomic epidemiology of SARS-CoV-2 in Kenya. This dataset contains results of samples positive for SARS-COV-2 by real-time PCR for the period 24th April to 31st December 2021 in Laikipia Kenya. Aside from the samples tested and results of the tests, it also contains the patients’ sociodemographic characteristic, cycle threshold and symptoms. The dataset is used to generate new SARS-CoV-2 genome sequences from RT-PCR positive samples collected in Laikipia Kenya.

Subject Medicine, Health and Life Sciences
Keyword SARS-CoV-2, Kenya, Laikipia, VOC, clinical characteristics
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Data Access: Open

License: Creative Commons Attribution 4.0 International

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ALambisia_Laikipia_Data_Codebook.pdf
ALambisia_Laikipia_Data_Codebook.pdf
Adobe PDF - 118.3 KB
Published Aug 22, 2022
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MD5: 0c32a44b8410f46c279b9a80bbaae38a
DocumentationData Dictionary/Variable Codebook
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ALambisia_Laikipia_Data_Readme.txt
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Published Aug 22, 2022
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MD5: 973365e5490033872effbdb9a0227934
DocumentationReadme
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DATA1.tab
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Published Aug 22, 2022
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26 Variables, 99 Observations UNF:6:H2+Vgd3nE4UrnDL+F94Rqw==
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DATA2.tab
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Published Aug 22, 2022
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3 Variables, 140 Observations UNF:6:oiyQlf2F8q6oTvePCw7F+A==
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Figures_LKP_Manuscript.R
R Syntax - 5.3 KB
Published Aug 22, 2022
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MD5: 68c84e40fc9fa61e74df90bbbd17a78b
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Tables_Rmarkdown.Rmd
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Published Aug 22, 2022
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supplementary Figure 1.png
supplementary Figure 1.png
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Published Sep 7, 2022
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Published Feb 6, 2023
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Supplementary table 1.csv
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Published Sep 7, 2022
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MD5: 278fe1748a273d0c5733b13a2bbf590c
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