Replication Data for: Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17

Version 1.0
Kamau, Everlyn; Otieno, James Richard; Murunga, Nickson; Oketch, John W.; Ngoi, Joyce M.; de Laurent, Zaydah R.; Mwema, Anthony; Nyiro, Joyce U.; Agoti, Charles N.; Nokes, D. James, 2020, "Replication Data for: Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17", https://doi.org/10.7910/DVN/RYISUE, Harvard Dataverse, V1
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Description

Replication datasets of the KHDSS RSVB genomes paper. This dataset includes, excel datasheets, sequence alignments and BEAST xml files, which can be used to replicate the analysis and figures described in the paper.

The data is part of the KHDSS study conducted to investigate surveillance of respiratory viruses in outpatient setting (KHDSS)

Subject Medicine, Health and Life Sciences
Related Publication Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17 ~ manuscript in preparation
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EKamau_HDSS_RSVB_Readme.txt
Plain Text - 2.8 KB
Published Mar 9, 2020
4 Downloads
MD5: 743d19ee161ef938b81b269e79377d12
Documentation
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HDSS_RSVB_data.zip
ZIP Archive - 2.2 MB
Published Mar 9, 2020
6 Downloads
MD5: b09f2adb52b8c4b535c4a7e88909aec0
Data used to generate main analysis figures. Use Rscript_HDSS_RSVB.Rmd
Data
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Rscript_HDSS_RSVB.Rmd
Unknown - 7.7 KB
Published Mar 9, 2020
4 Downloads
MD5: f55a9bfbdd61ec2ff84ab3d77181fbf6
R script used to generate main analysis figures (1-5). Uses dataset in HDSS_RSVB_data.zip
Code
Temporal_distribution_rsv.do
Stata Syntax - 9.7 KB
Published Mar 9, 2020
2 Downloads
MD5: 590cf69860efb09a0a7164ab6bc9d070
Analysis program (STATA v15) used to generate supplementary figures 1, 2, 3, and 5
Code
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SuppData.zip
New folder/ZIP Archive - 33.1 KB
Published Mar 9, 2020
2 Downloads
MD5: 17acea2bf08e6aa92712b9f209ef7b4d
Contains data used in generating supplementary figures 1, 2, 3 and 5
Data
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