GUD IGSM numerical code and inputs

Version 1.0
Dutkiewicz, Stephanie; Jahn, Oliver, 2021, "GUD IGSM numerical code and inputs", https://doi.org/10.7910/DVN/UA8VNU, Harvard Dataverse, V1
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Description
The model code is available at https://gitlab.com/jahn/gud
Here we include:
MITgcm_gud_igsm.tar - a tarball of the MITgcm, including the ecosystem, biogeochemical, and optical codes (pkg/gud, pkg/radtrans) and the specific modifications for the 51 plankton setup and the a climate change simulation (see monod5_igsm).
runtime_file.tar - a tarball with the necessary run time parameter files.
The two *.nml files include all the ecosystem/biogeochemical parameters used in this simulation
The three *.txt files include the spectral absorption and scattering used in the simulations

This simulations has been used in:
Bardon, L., B.A. Ward, S. Dutkiewicz, and B.B. Cael. On predicting plankton biogeography with machine-learning methods. In revision for Geophysical Research Letters.

Cael, B.B., S. Dutkiewicz and S.A. Henson. Abrupt shifts in 21st century plankton communities. In revision for Science Advances.

Henson, S.A., S.R. Allen, B.B. Cael, and S. Dutkiewicz. Future phytoplankton diversity in a changing climate. In revision for Nature Communications.

(2021-05-11)
Subject Earth and Environmental Sciences
Keyword marine ecosystem
Related Publication Bardon, L., B.A. Ward, S. Dutkiewicz, and B.B. Cael. On predicting plankton biogeography with machine-learning methods. In revision for Geophysical Research Letters.
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gud_params.nml
application/vnd.enliven - 21.0 KB
Published Aug 9, 2021
40 Downloads
MD5: 5e6182a757cbeda4e1c9379c83d80108
biogeochemistry and some ecosystem parameters
gud_traits.nml
application/vnd.enliven - 102.2 KB
Published Aug 9, 2021
40 Downloads
MD5: c4c5fa610fe7148739f62fda01cef101
plankton trait parameters
MITgcm_gud_igsm.tar
TAR Archive - 28.4 MB
Published Aug 9, 2021
47 Downloads
MD5: 2334c8a7dac17d8938ed42130297b21f
model code, including specific modifications for this simulation (see directory monod5_igsm)
optics_detritus_8_sameas4_bandave25.txt
Plain Text - 869 B
Published Aug 9, 2021
31 Downloads
MD5: 6483d770c5992bdb071b56a11e943425
absorption and scattering spectra for detrital matter
Preview "optics_detritus_8_sameas4_bandave25.txt"
optics_phyto_10_bandave25_newsize5_diffsyn_zoo.txt
Plain Text - 9.0 KB
Published Aug 9, 2021
32 Downloads
MD5: b29b571dbb59b26190283b52d8d79a1e
absorption and scattering spectra for plankton
Preview "optics_phyto_10_bandave25_newsize5_diffsyn_zoo.txt"
optics_water_Aug2014_bandave25.txt
Plain Text - 581 B
Published Aug 9, 2021
31 Downloads
MD5: 0645f02adbde1ad48754b9dd9e47483f
absorption and scattering spectra for water molecules
Preview "optics_water_Aug2014_bandave25.txt"
runtime_file.tar
TAR Archive - 120.0 KB
Published Aug 9, 2021
33 Downloads
MD5: aa20a18e2af1103b16d440cbf146badd
run time files needed for MITgcm framework
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