Surveillance and diagnostics dataset on Sri Lankan cassava mosaic virus (Fam. Geminiviridae) and CMD in Thailand

Version 1.2

Siriwan, Wanwisa; Jiménez, Jenyfer; Hemniam, Nuannapa; Saokham, Kingkan; Cuellar, Wilmer, 2020, "Surveillance and diagnostics dataset on Sri Lankan cassava mosaic virus (Fam. Geminiviridae) and CMD in Thailand", https://doi.org/10.7910/DVN/Z5TR2F, Harvard Dataverse, V1, UNF:6:v47oLjxsXGUV4c83qrYVYQ== [fileUNF]

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Description	Emergent agricultural pathogens cause severe damage worldwide. Standard surveillance and diagnostic protocols need to be evaluated and implemented at regional level, particularly with diseases caused by a wide range of pathogens that can induce similar symptoms. This dataset provides a description of surveillance and diagnostics data for CMD in Thailand (2019), indicating location of the surveyed fields, presence of visual symptoms, symptom severity and PCR-diagnostic results with two primer sets, both of them targeting the CP region. All samples were collected using a standard protocol as described in the associated manuscript. More information is available upon request.
Subject	Earth and Environmental Sciences; Agricultural Sciences
Keyword	Cassava, Sri Lankan cassava mosaic virus, Genome surveillance, South East Asia, Disease diagnostics, Disease surveillance, Epidemiology, Latin America and the Caribbean, Crops for Nutrition and Health
Related Publication	Wanwisa Siriwan, Jenyfer Jimenez, Nuannapa Hemniam, Kingkan Saokham, Diana Lopez-Alvarez, Ana M. Leiva, Andres Martinez, Leroy Mwanzia, Luis A. Becerra Lopez-Lavalle, Wilmer J. Cuellar, Surveillance and diagnostics of the emergent Sri Lankan cassava mosaic virus (Fam. Geminiviridae) in Southeast Asia, Virus Research, Volume 285, 2020, 197959, ISSN 0168-1702doi: 10.1016/j.virusres.2020.197959
Notes	Cassava leaf samples collected in fields from Thailand diagnosed to detect the presence of Sri Lankan cassava mosaic virus, Cassava common mosaic virus and Cassava-torrado like virus
License/Data Use Agreement	Custom Dataset Terms

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	1 to 3 of 3 Files	Original Format Archival Format (.tab) Request Access
	01. Dictionary.xls MS Excel Spreadsheet - 26.0 KB Published Jun 25, 2020 10 Downloads MD5: 49e9466bcee5abc13e57f94d84883bf3 This table contains the list of parameters measured in the field and laboratory with their description and units. Documentation	Access File File Access Public Download Options MS Excel Spreadsheet Download Metadata Data File Citation Download EndNote XML Download RIS Download BibTeX
	02. Data.tab Tabular Data - 62.7 KB Published Jun 25, 2020 19 Downloads 14 Variables, 600 Observations UNF:6:P8n1G7allg9UZ6fRP+Zdlg== Samples Data	Preview "02. Data.tab" Preview "02. Data.tab" Access File File Access Public Download Options MS Excel Spreadsheet (Original File Format) Tab-Delimited RData Download Metadata DDI Codebook v2 Data File Citation Download EndNote XML Download RIS Download BibTeX Explore Options Data Explorer v2
	03. Data with GPS.tab Tabular Data - 78.1 KB Published Jun 25, 2020 2 Downloads 16 Variables, 600 Observations UNF:6:/u6Yj3kMUFZcP8Qu6/gAlA== Samples Data	Access File File Access Restricted Request Access Download Metadata Data File Citation Download EndNote XML Download RIS Download BibTeX

Citation Metadata

Persistent Identifier	doi:10.7910/DVN/Z5TR2F
Publication Date	2020-06-25
Title	Surveillance and diagnostics dataset on Sri Lankan cassava mosaic virus (Fam. Geminiviridae) and CMD in Thailand
Author	Siriwan, WanwisaKasetsart University International Center for Tropical Agriculture - CIAThttps://orcid.org/0000-0001-8149-6615 Hemniam, NuannapaKasetsart University Saokham, KingkanKasetsart University International Center for Tropical Agriculture - CIAThttps://orcid.org/0000-0003-4702-3237
Point of Contact	Use email button above to contact. Alliance Data Management (Alliance of Bioversity International and CIAT)
Description	Emergent agricultural pathogens cause severe damage worldwide. Standard surveillance and diagnostic protocols need to be evaluated and implemented at regional level, particularly with diseases caused by a wide range of pathogens that can induce similar symptoms. This dataset provides a description of surveillance and diagnostics data for CMD in Thailand (2019), indicating location of the surveyed fields, presence of visual symptoms, symptom severity and PCR-diagnostic results with two primer sets, both of them targeting the CP region. All samples were collected using a standard protocol as described in the associated manuscript. More information is available upon request.
Subject	Earth and Environmental Sciences; Agricultural Sciences
Keyword	Cassava (AGROVOC) http://aims.fao.org/aos/agrovoc/c_9649 Sri Lankan cassava mosaic virus Genome surveillance South East Asia (AGROVOC) http://aims.fao.org/aos/agrovoc/c_7260 Disease diagnostics Disease surveillance (AGROVOC) http://aims.fao.org/aos/agrovoc/c_16411 Epidemiology (AGROVOC) http://aims.fao.org/aos/agrovoc/c_2615 Latin America and the Caribbean (Research Region) Crops for Nutrition and Health (Research Lever)
Topic Classification	Plant viruses (AGROVOC) http://aims.fao.org/aos/agrovoc/c_5985
Related Publication	Wanwisa Siriwan, Jenyfer Jimenez, Nuannapa Hemniam, Kingkan Saokham, Diana Lopez-Alvarez, Ana M. Leiva, Andres Martinez, Leroy Mwanzia, Luis A. Becerra Lopez-Lavalle, Wilmer J. Cuellar, Surveillance and diagnostics of the emergent Sri Lankan cassava mosaic virus (Fam. Geminiviridae) in Southeast Asia, Virus Research, Volume 285, 2020, 197959, ISSN 0168-1702 doi 10.1016/j.virusres.2020.197959 https://doi.org/10.1016/j.virusres.2020.197959
Notes	Cassava leaf samples collected in fields from Thailand diagnosed to detect the presence of Sri Lankan cassava mosaic virus, Cassava common mosaic virus and Cassava-torrado like virus
Producer	Kasetsart University Centro Internacional de Agricultura Tropical (CIAT) https://ciat.cgiar.org/ Center for Agricultural Biotechnology Center of Excellence on Agricultural Biotechnology
Production Date	2020
Distributor	International Center for Tropical Agriculture (CIAT)
Depositor	Garcia, Carolina
Deposit Date	2020-06-04
Date of Collection	Start Date: 2019-05-28; End Date: 2019-07
Data Type	Survey Data; Crop Protection Data
Related Material	Cuellar WJ, Mwanzia L, Lourido D, Garcia C, Martínez A, Cruz P, Pino L, Tohme J. 2018. PestDisPlace: Monitoring the Distribution of Pests and Diseases. Available at: pestdisplace.org Version 2.0

Geospatial Metadata

Geographic Coverage	Thailand

Social Science and Humanities Metadata

Universe	Cassava leaf samples collected in fields from Thailand diagnosed to detect the presence of Sri Lankan cassava mosaic virus, Cassava common mosaic virus and Cassava-torrado like virus

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