Replication Data for: Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance

Version 2.1
Replication Data for: Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance
Lambisia, Arnold W.; Nyiro, Joyce U.; Morobe, John M.; Mohammed, Khadija S.; Makori, Timothy N.; Ndwiga, Leonard; Mburu, Maureen W.; Moraa, Edidah O.; Musyoki, Jennifer; Murunga, Nickson; Bejon, Philip; Ochola-Oyier, Lynette Isabella; Nokes, D. James; Agoti, Charles N.; Githinji, George, 2022, "Replication Data for: Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance", https://doi.org/10.7910/DVN/ZBGOHB, Harvard Dataverse, V2, UNF:6:8R0YXLi90ksncN3luWHL3w== [fileUNF]
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Description

This is a replication dataset for the manuscript titled: "Detection of a SARS-CoV-2 Beta-like Variant with Additional Mutations in Coastal Kenya after >1 Year of Disappearance."

The dataset is part of a study that investigated the genomic epidemiology of SARS-CoV-2 in Kenya. This dataset contains the phylogenetic trees and scripts used for visualization.The dataset is used to generate the Beta-like SARS-CoV-2 genome sequence from an RT-PCR positive sample collected in Kilifi Kenya.

Subject Medicine, Health and Life Sciences
Keyword SARS-CoV-2, Kenya, Beta VOC, convergent evolution
Notes

Data Access: Open

License: Creative Commons Attribution 4.0 International

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ALambisia_SARS_COV2_Beta_data_codebook.pdf
ALambisia_SARS_COV2_Beta_data_codebook.pdf
Adobe PDF - 85.7 KB
Published Dec 15, 2022
9 Downloads
MD5: 68aa8b663078511a170b68efb9a4f2df
DocumentationData Dictionary/Variable Codebook
Preview "ALambisia_SARS_COV2_Beta_data_codebook.pdf"
ALambisia_SARS_COV2_Beta_readme.txt
Plain Text - 4.1 KB
Published Dec 15, 2022
7 Downloads
MD5: fbfb51b3743743a0b395f9d0a56310d8
DocumentationReadme
Preview "ALambisia_SARS_COV2_Beta_readme.txt"
DATA1.tab
Tabular Data - 238 B
Published Dec 15, 2022
10 Downloads
10 Variables, 1 Observations UNF:6:8R0YXLi90ksncN3luWHL3w==
Datacsv
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DATA1.xlsx
MS Excel Spreadsheet - 9.0 KB
Published Dec 15, 2022
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MD5: 49b01667eb6c75f82e44c50cf17855f3
DataMS Excel
divergence_tree.nexus
Unknown - 769.9 KB
Published Dec 15, 2022
5 Downloads
MD5: 904798289190b012b6797a6996407a5d
Phylogenetic trees
gisaid_supplemental_table_epi_set_230104gw.pdf
gisaid_supplemental_table_epi_set_230104gw.pdf
Adobe PDF - 20.7 KB
Published Jan 6, 2023
6 Downloads
MD5: f33db56d5a72d359cb38eb07b84ad575
Supplementary information
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timetree.nexus
Unknown - 763.0 KB
Published Dec 15, 2022
5 Downloads
MD5: 89a73afa80263559e4827d27b30dd09c
Phylogenetic trees
tree1.nwk
Unknown - 15.6 KB
Published Dec 15, 2022
5 Downloads
MD5: 6467474ea3481176dde3deae2792cd82
Phylogenetic trees
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