Replication Data for: Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya

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Replication Data for: Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya
Otieno, Grieven P.; Murunga, Nickson; Agoti, Charles; Gallagher, Katherine; Awori, Juliet O.; Nokes, David James, 2020, "Replication Data for: Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya", https://doi.org/10.7910/DVN/ZQ1DJY, Harvard Dataverse, V1, UNF:6:pmwt9Ii4/dmklZPFjswi3w== [fileUNF]
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Description

These data is part of the long-term continuous respiratory virus surveillance among pneumonia admissions to Kilifi County Hospital (KCH) study.It contains results of specimens collected between January 2007 and December 2019 which were were processed and screened for 3 HCoVs (OC43, NL63 and 229E) and at least 12 other respiratory viral pathogens using real-time polymerase chain reaction (RT-PCR). Aside from that, it also contains the patients’ sociodemographic characteristics (sex and age) and presenting symptoms. The data is used to describe the long-term patterns of paediatric disease associated with three viruses, HCoV-NL63, OC43 and 229E, in coastal Kenya.

Subject Medicine, Health and Life Sciences
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GPOtieno_HCOV_Codebook.pdf
GPOtieno_HCOV_Codebook.pdf
Adobe PDF - 130.4 KB
Published Jun 2, 2020
13 Downloads
MD5: f87073829d743a2a9b56467d2b4959b1
Data dictionary - contains variable description and value labels
Documentation
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GPOtieno_HCOV_Readme.txt
Plain Text - 5.2 KB
Published Jun 2, 2020
5 Downloads
MD5: 3b291afefe849903aaa4a5fd2cf050cb
Readme file
Documentation
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KCH_paed_ARI_surv_pneumo-1.tab
Tabular Data - 1.7 MB
Published Jun 2, 2020
19 Downloads
47 Variables, 11445 Observations UNF:6:A1rtHQe78wahyMiWfmvHYQ==
Analysis dataset (STATA version 13.1)
Data
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KCH_paed_ARI_surv_pneumo.tab
Tabular Data - 2.2 MB
Published Jun 2, 2020
15 Downloads
47 Variables, 11445 Observations UNF:6:Ump4x6dxrmeY9uU9xDt5RQ==
Analysis dataset (CSV format)
Data
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1_descriptive_analysis.do
Stata Syntax - 2.9 KB
Published Jun 2, 2020
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MD5: 4f48475a92617c86f8f04ac82dcb7713
Codes contained in this script is used to generate information in the tables, data on frequencies, HCOVs virus distributions and proportions
Code
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2_graph_outputs.do
Stata Syntax - 17.1 KB
Published Jun 2, 2020
5 Downloads
MD5: 0024ce5c568f370695fd61823ff997a5
This script contains code that generated charts used in the paper
Code
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3_ORs.do
Stata Syntax - 2.5 KB
Published Jun 2, 2020
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MD5: b65cfc5b3e47003d9217633c5c9a12d0
This script contains code that fit univariable logistic regression models for each HCoV type
Code
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4_seasonality.do
Stata Syntax - 2.8 KB
Published Jun 2, 2020
7 Downloads
MD5: 7d71998a93a1004f7ebe58a6da8fff28
Contains scripts for analysesseasonality of HCoV type
Code
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