Datasets and related dictionaries for PlosONE manuscript. "Dataset-I": focuses on the thorough comparisons of co-extracted RNA and DNA quantity and quality according to technical details (e.g., elution, cellularity), logistics (time elapsed between block sectioning and co-extraction), clinicopathologic characteristics, omics testing QC, and RNA and DNA testing success (pass/fail or flagged for miRNA expression and methylation; coverage for targeted NGS mutation screening. Data are included for 658 melanoma patients, regardless of distribution for testing, or omics testing QC results. "Dataset-II": focuses on the thorough comparisons of the co-extracted RNA and DNA quantity and quality according to technical details (e.g., elution, cellularity), clinicopathologic characteristics, omics testing QC, and RNA and DNA testing success (pass/fail or flagged for miRNA expression and methylation; coverage for targeted NGS mutation screening). "Dataset-III": contains survival status and informs distribution and pass/fail status of samples tested with omics platforms. Additional information will become available when the data embargo is lifted (December 1st, 2023), through dbGAP, and can be requested to the InterMEL Administrative Core by contacting Marianne Berwick at mberwick@salud.unm.edu. For other questions regarding datasets, contact the Dataverse owner at orlowi@mskcc.org.
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Mar 15, 2023
Irene Orlow; Jessica M. Kenney; Kelli O’Connell; Keimya D. Sadeghi; Tim K. Lee; Cecilia Lezcano; Klaus J. Busam; Eva Hernando; Sharon N. Edmiston; Tawny W. Boyce; Christopher I. Amos; James S. Wilmott; Anne E. Cust; Richard A. Scolyer; Graham J. Mann; Hazel Burke; Valerie Jakrot; Ping Shang; Peter M. Ferguson; Jennifer S. Ko; Peter Ngo; Pauline Funchain; Judy R. Rees; Honglin Hao; Eloise Parrish; Kathleen Conway; Paul B. Googe; David W. Ollila; Stergios J. Moschos; Douglas Hanniford; Diana Argibay; Jeffrey E. Lee; Iman Osman; Li Luo; Pei-Fen Kuan; Arshi Aurora; Bonnie E. Gould Rothberg; Marcus W. Bosenberg; Meg R. Gerstenblith; Cheryl Thompson; Paul N. Bogner; Ivan P. Gorlov; Sheri L. Holmen; Elise K. Brunsgaard; Yvonne M. Saenger; Ronglai Shen; Venkatraman Seshan; Eduardo Nagore; Marc S. Ernstoff; Colin B. Begg; Nancy E. Thomas; Marianne Berwick, 2023, "InterMEL biorepository and clinical database to report methods & best practices_dataset-I", https://doi.org/10.7910/DVN/QG5KSR, Harvard Dataverse, V1
Dataset I and dictionary I
Mar 15, 2023
Irene Orlow; Cecilia Lezcano; Klaus J. Busam; Keimya D. Sadeghi; Jessica M. Kenney; Kelli O’Connell; Tawny W. Boyce; Eva Hernando; Sharon N. Edmiston; Christopher I. Amos; James S. Wilmott; Anne E. Cust; Richard A. Scolyer; Graham J. Mann; Hazel Burke; Valerie Jakrot; Ping Shang; Peter M. Ferguson; Jennifer S. Ko; Peter Ngo; Pauline Funchain; Judy R. Rees; Honglin Hao; Eloise Parrish; Kathleen Conway; Paul B. Googe; David W. Ollila; Stergios J. Moschos; Douglas Hanniford; Diana Argibay; Jeffrey E. Lee; Iman Osman; Li Luo; Pei-Fen Kuan; Arshi Aurora; Bonnie E. Gould Rothberg; Marcus W. Bosenberg; Meg R. Gerstenblith; Cheryl Thompson; Paul N. Bogner; Ivan P. Gorlov; Sheri L. Holmen; Elise K. Brunsgaard; Yvonne M. Saenger; Ronglai Shen; Venkatraman Seshan; Eduardo Nagore; Marc S. Ernstoff; Colin B. Begg; Nancy E. Thomas; Marianne Berwick, 2023, "InterMEL biorepository and clinical database to report methods & best practices_dataset-II", https://doi.org/10.7910/DVN/HK7LVX, Harvard Dataverse, V1
Dataset II and dictionary II
Mar 15, 2023
Irene Orlow; Jessica M. Kenney; Keimya D. Sadeghi; Kelli O’Connell; Tim K. Lee; Cecilia Lezcano; Klaus J. Busam; Tawny W. Boyce; Eva Hernando; Sharon N. Edmiston; Christopher I. Amos; James S. Wilmott; Anne E. Cust; Richard A. Scolyer; Graham J. Mann; Hazel Burke; Valerie Jakrot; Ping Shang; Peter M. Ferguson; Jennifer S. Ko; Peter Ngo; Pauline Funchain; Judy R. Rees; Honglin Hao; Eloise Parrish; Kathleen Conway; Paul B. Googe; David W. Ollila; Stergios J. Moschos; Douglas Hanniford; Diana Argibay; Jeffrey E. Lee; Iman Osman; Li Luo; Pei-Fen Kuan; Arshi Aurora; Bonnie E. Gould Rothberg; Marcus W. Bosenberg; Meg R. Gerstenblith; Cheryl Thompson; Paul N. Bogner; Ivan P. Gorlov; Sheri L. Holmen; Elise K. Brunsgaard; Yvonne M. Saenger; Ronglai Shen; Venkatraman Seshan; Eduardo Nagore; Marc S. Ernstoff; Colin B. Begg; Nancy E. Thomas; Marianne Berwick, 2023, "InterMEL biorepository and clinical database to report methods & best practices_dataset-III", https://doi.org/10.7910/DVN/GD8UZG, Harvard Dataverse, V1
Dataset III and dictionary III
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