This data repository contains all final files necessary to create population genomic results and figures for the 2025 TPWD Texas Tortoise report.
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81 to 90 of 99 Results
watershed_p_v2.sbx
Jun 12, 2025 - Gopherus berlandieri population genomics mapping
ESRI Spatial Index - 1.9 KB - MD5: ff820084397eb977649fbbb4c5a4fd38
watershed_p_v2.shp
Jun 12, 2025 - Gopherus berlandieri population genomics mapping
Shape - 10.2 MB - MD5: a6aeeae6794e96a15487e899e9f9a6eb
watershed_p_v2.shp.xml
Jun 12, 2025 - Gopherus berlandieri population genomics mapping
XML - 26.1 KB - MD5: f1b5d3975a45c80367f808bdea15fff5
watershed_p_v2.shx
Jun 12, 2025 - Gopherus berlandieri population genomics mapping
Shape - 18.1 KB - MD5: 3c17b5041e873c94ea691cb1152227e7
watersheds_2011.doc
Jun 12, 2025 - Gopherus berlandieri population genomics mapping
MS Word - 473.5 KB - MD5: be628111279d58eb495c956ab90bf001
Gopherus berlandieri population genomics variants
Jun 11, 2025
McDaniels, Griffin, 2025, "Gopherus berlandieri population genomics variants", https://doi.org/10.7910/DVN/61KYLM, Harvard Dataverse, V2, UNF:6:7j457iP/9kFvNmDaPrnaWg== [fileUNF]
This repository contains the genomic datasets used to generate the 2025 Gopherus berlandieriTPWD report, including (1) base-recalibrated, filtered SNPs and (2) based-recalibrated, filtered, linkage-pruned SNPs.
gber_disease_meta_JT_05-14-2025.xlsx
Jun 11, 2025 - Gopherus berlandieri population genomics variants
MS Excel Spreadsheet - 27.5 KB - MD5: e896fa03841179ca445a5a22a725f812
Metadata for tortoise samples, including GPS, age, sex, health assessment, morphomotrics, ect.
gber_filtered_pruned_final.vcf.gz
Jun 11, 2025 - Gopherus berlandieri population genomics variants
Gzip Archive - 20.8 MB - MD5: fd49389454cb5bf7ca011290e4323a9d
The final SNP dataset used in downstream analysis, compressed in gzip format with bcftools. Contains approx. 800k high-quality, unlinked variants.
gber_filtered_pruned_final.vcf.gz.tbi
Jun 11, 2025 - Gopherus berlandieri population genomics variants
Unknown - 452.2 KB - MD5: 1cba5d5133feb19a794390132a54eda7
The tabix index file linked to the final filtered, pruned SNP dataset, created with bcftools.
gber_filtered.vcf.gz
Jun 11, 2025 - Gopherus berlandieri population genomics variants
Gzip Archive - 11.0 GB - MD5: 8022ca5d459e8128757e4b6fbbc38865
The filtered but un-linkage pruned SNPs dataset, containing approx. 26 million high-quality variants. Compressed in gzip format with bcftools.
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