Genotype data generated by the Australian Grains Genebank Strategic Partnership.

Three types of genotype calls have been made available:

- "Raw_UnAnchored": Unanchored raw genotypes called for all markers, without genomic positions. REF/ALT is phased against the marker design. Genotypes are called as 0 - REF, 2 - ALT, 1 - HET, NC - no call (missing data), N - null (ie: locus is absent).

- "Raw_Anchored-": Raw genotypes anchored to assembly. Markers have been positioned and phased where the REF allele corresponds to the nucleotide in the indicated genome assembly. The vast majority of markers map to a single locus in the genome. For markers mapping to multiple positions, existing knowledge is used to inform the position selected. As knowledge for the correct location of markers is improved, positions will be updated in later releases. Genotypes are called as 0/0 - REF, 1/1 - ALT, 0/1 - HET, ./. - no call (missing data).

- "FilledIn_Anchored-": The Raw_Anchored genotypes following local imputation and phasing using Beagle v4.1 and Eagle v2.4.1.

It is recommended that most users access the FilledIn_Anchored file since missing data is not tolerated in many types of statistical analyses such as GWAS.

Notes on trait linked markers:

All trait linked markers are derived from published literature or have been obtained via personal communications with permission to make them publicly available.

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