The bioscience department focuses on the molecular biology, epidemiology and immunology of infectious diseases with particular emphasis on the development of vaccines and understanding the transmission of pathogens. We work on malaria, viral pathogens, HIV and bacterial disease, and provide strategic direction to the Laboratory Research Platform

Our work on malaria covers the three life-cycle stages; gametocytes (where we are developing a human challenge model to test transmission blocking immunity and profiling the transmitting population in the community and developing markers of infectiousness); blood stage (where we are identifying the merozoite and red cell surface targets of human immunity and examining the role of parasite exposure on host immunity using a systems immunology approach); and pre-erythrocytic stages where we are examining vaccine-induced immunity.

Field surveillance for acute HIV infection and monitoring of a cohort and collaboration with IAVI has facilitated interests in functional assays (specifically the viral inhibition assay) and on the impact of transmitted drug resistance in Kenya.

We are undertaking work on the genomics of malaria, viral pathogens and bacterial pathogens in order to determine what the source of infection is (i.e. “who infects whom”) in collaboration with the Epidemiology and Demography Department.

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1 to 10 of 61 Results
Jun 30, 2025
Mutheo, Agnetor; Bosire, Carren; Jeza, Victor; Githinji, George; Wambua, Sammy, 2025, "Replication Data for: Metagenomic exploration of antimicrobial resistance genes in marine bacteria ecosystem", https://doi.org/10.7910/DVN/I5KTMP, Harvard Dataverse, V3
This is a replication dataset for the manuscript titled: "Metagenomic exploration of antimicrobial resistance genes in marine bacteria ecosystem." This dataset includes the samples used in the analysis as well as the results from the analysis and the associated scripts for the article titled "Metagenomic exploration of antimicrobial resistance gene...
Jun 26, 2025
Kimotho, John; Mwikali, Kioko; Mudibo, Evans; Muthui, Michelle; Murungi, Linda; Muia, Alfred; Namwoso, Lynn; Kimani, Makobu; Orimbo, John; Ogutu, Benhards; Muema, Daniel; Ndung'u, Thumbi; Rono, Martin; Nduati, Eunice W., 2025, "Replication Data for: Lifelong malaria exposure drives B cell activation and post-transcriptional regulation while suppressing inflammatory transcriptional programs", https://doi.org/10.7910/DVN/CN5CEU, Harvard Dataverse, V2, UNF:6:AmHvRBwDgpMwE2GvldNKrg== [fileUNF]
This is a replication dataset for the manuscript titled: "Lifelong malaria exposure drives B cell activation and post-transcriptional regulation while suppressing inflammatory transcriptional programs ." This dataset was generated as part of a study investigating immunological signatures associated with lifelong malaria exposure among healthy adult...
May 8, 2025
Okoko, Miguel; Karisa, Jonathan; Gona, Rehema; Odongo, Tobias; Otieno, Bruno; Yaa, Festus; Meli, Peter; Ondieki, Zedekiah; Tuwei, Mercy; Bartilol, Brian; Shee, Faiz; Chaccour,Carlos; Wanjiku, Caroline; Kiuru, Caroline; Maia, Marta F., 2025, "Replication Data for: Phenotypic and genotypic insecticide resistance profiles of main malaria vectors in Kwale county, Kenya", https://doi.org/10.7910/DVN/ZJNGZR, Harvard Dataverse, V3, UNF:6:mvCQj64WTTmzp/zEz4vwDA== [fileUNF]
This is a replication dataset for the manuscript titled: "Phenotypic and genotypic insecticide resistance profiles of main malaria vectors in Kwale county, Kenya". Long-lasting insecticide-treated nets are the primary malaria vector control measure in coastal Kenya. In 2018, phenotypic resistance to pyrethroids and low frequency of L1014S kdr mutat...
May 6, 2025
Mwangi, Shaban; Gomes, Claudia; Abdi, Abdirahman, 2025, "Replication Data for: Specific Biomarkers Differentiate Cerebral Malaria from Other Causes of Coma in African children", https://doi.org/10.7910/DVN/7IKHOR, Harvard Dataverse, V1, UNF:6:KLAMdC6vofVKSpF4BYxeAA== [fileUNF]
This is a replication dataset for the manuscript titled: "Specific Biomarkers Differentiate Cerebral Malaria from Other Causes of Coma in African children" The dataset file contains study participants' clinical characteristics and measurements as well as measured/quantified ELISA analytes.
Apr 23, 2025
Tuwei, Mercy J.; Maia, Marta F., 2025, "Replication Data for: MALDI-TOF MS for identification of Afro-tropical secondary malaria vectors", https://doi.org/10.7910/DVN/GEYSM1, Harvard Dataverse, V1
This is a replication dataset for the manuscript titled: "MALDI-TOF MS for identification of Afro-tropical secondary malaria vectors." Characterizing malaria epidemiology at the local level requires understanding the diverse malaria vector species driving transmission, including both primary and secondary vectors. Effective mosquito surveillance an...
Mar 17, 2025
Achieng, Nicole; Kimenyi, K. Muteru; Mgawe, Cavin; Ndwiga, Leonard; Ochola-Oyier, Lynette Isabella, 2025, "Replication Data for: Characterizing Plasmodium falciparum genetic diversity and complexity of infections in clinical malaria infections in Western and Coastal Kenya using the poly-alpha microsatellite marker", https://doi.org/10.7910/DVN/DAHYSD, Harvard Dataverse, V2, UNF:6:1X4CWOSdFdKC1T6kemZecQ== [fileUNF]
This is a replication dataset for the manuscript titled: “Characterizing Plasmodium falciparum genetic diversity and complexity of infections in clinical malaria infections in Western and Coastal Kenya using the poly-alpha microsatellite marker.” Poly-alpha microsatellite marker was genotyped from the isolates by PCR, fragment sizes determined by c...
Mar 17, 2025
Downs, Louise; Orindi, Benedict; Hamaluba, Mainga; Ngetsa, Caroline, 2025, "Replication Data for: Establishing laboratory reference ranges for haematological and biochemical blood parameters in adults and children in Kilifi, Kenya", https://doi.org/10.7910/DVN/RIHHGO, Harvard Dataverse, V3, UNF:6:5xqE7xJIigHSWdz+qoDtHA== [fileUNF]
This is a replication dataset for the manuscript titled: "Establishing laboratory reference ranges for haematological and biochemical blood parameters in adults and children in Kilifi, Kenya" submitted to Wellcome Open Research. The data here were used to derive reference ranges for a number of haematological and biochemical blood parameters for bo...
Feb 20, 2025
Tuwei, Mercy; Karisa, Jonathan; Kiuru, Caroline; Ondieki, Zedekiah; Odongo, Tobias; Muturi,Martha; Mure, Festus; Otieno, Bruno; Akoko,Miguel; Gona, Rehema; Ominde, Kelly; Constantino,Luis; Cole, Gildo; Anastácio, Trisa; Candrinho, Baltazar; Armazia, Romário; Alves, Claudia; Ramaitha, Edith; Rono, Martin; Mwangangi, Joseph; Mbogo, Charles; Wanjiku, Caroline; Chaccour, Carlos; Maia, Marta, 2025, "Replication Data for: Age structure and parity status determination of Afrotropical malaria vectors using MALDI-TOF MS", https://doi.org/10.7910/DVN/VJQXH3, Harvard Dataverse, V1, UNF:6:IXeYXAiq8I+SUHmB2PlgOw== [fileUNF]
This is a replication dataset for the manuscript titled: "Age structure and parity status determination of Afrotropical malaria vectors using MALDI-TOF MS." The age structure of a mosquito population helps estimate the proportion of vectors capable of transmitting malaria. Many malaria transmission models rely on mosquito longevity as key parameter...
Feb 7, 2025
Odongo, Tobias; Omondi, Isaiah; Wanjiku, Caroline; Okoko, Miguel; Kiuru,Caroline; Kariuki, Mercy; Ringera, Isaac; Otieno,Bruno; Yaa, Festus; Furnival-Adams, Joanna; Sanz Gutierrez, Almudena; Otuko, Rachel; Rabinovich, Regina; Mwangangi, Joseph; Chaccour, Carlos; Maia, Marta, 2025, "Replication Data for: Toxicity of ivermectin to bed bugs (Cimex hemipterus) and risk factors associated with infestation in Kwale county, coastal Kenya.", https://doi.org/10.7910/DVN/E5VVGM, Harvard Dataverse, V1, UNF:6:GOl2BK1QYQWxI1Ky/IRvcw== [fileUNF]
This is a replication dataset for the manuscript titled: "Toxicity of ivermectin to bed bugs (Cimex hemipterus) and risk factors associated with infestation in Kwale county, coastal Kenya." Bed bugs (Cimex spp.) are obligate ectoparasites that have long been associated with human dwellings, causing discomfort and psychosocial distress. Conventional...
Feb 6, 2025 - Harvard Dataverse
Kiyuka, Patience, 2024, "Replication Data for: Dynamics of Plasmodium falciparum gametocyte carriage in pregnant women under intermittent preventive treatment with sulfadoxine-pyrimethamine and its resistance in Kilifi, study protocol", https://doi.org/10.7910/DVN/JV8E9M, Harvard Dataverse, V2
We provide details of our study protocol that seeks to investigate the prevalence of Plasmodium falciparum, drug resistance and gametocyte carriage in women under intermittent preventive treatment with sulfadoxine-pyrimethamine
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