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21 to 30 of 446 Results
MALDI_TOF MS_Secondary malaria vectors_22042025_Codebook.xlsx
Apr 23, 2025 - Replication Data for: MALDI-TOF MS for identification of Afro-tropical secondary malaria vectors
MS Excel Spreadsheet - 28.7 KB - MD5: 9662956b745a03d61fc0df0647b86f8a
DocumentationVariable Codebook/Data Dictionary
Secondary malaria vectors_22042025-Final.csv
Apr 23, 2025 - Replication Data for: MALDI-TOF MS for identification of Afro-tropical secondary malaria vectors
Comma Separated Values - 130.9 KB - MD5: 7fb18b46b77240de5b4366b2690818d0
csv fileData
Trimming of the reads using Trimmomatic.sh
Apr 10, 2025 - Replication Data for: Metagenomic exploration of antimicrobial resistance genes in marine bacteria ecosystem
Shell Script - 1.6 KB - MD5: b8a9050068700de9f5f687afe2bedc34
Code
script showing the trimming steps and parameters
Agnetor_Data_Readme_V1.txt
Apr 10, 2025 - Replication Data for: Metagenomic exploration of antimicrobial resistance genes in marine bacteria ecosystem
Plain Text - 6.3 KB - MD5: 214aef2d9f11d84b54061f654b27cd33
DocumentationReadme
ARG profiling.sh
Apr 10, 2025 - Replication Data for: Metagenomic exploration of antimicrobial resistance genes in marine bacteria ecosystem
Shell Script - 272 B - MD5: 3f205f45dbc21350e3cc1431de91eb8e
Code
scripts showing the ARG screening process
ARGs Annotation and Drug Classification.docx
Apr 10, 2025 - Replication Data for: Metagenomic exploration of antimicrobial resistance genes in marine bacteria ecosystem
MS Word - 15.9 KB - MD5: 1ac9cf83114d9f70d1e745feeef5f04f
Code
This table clssifies the genes into different drug classes and thecorresponsing resistance mechanism
Assembly of the trimmed reads using Megahit.sh
Apr 10, 2025 - Replication Data for: Metagenomic exploration of antimicrobial resistance genes in marine bacteria ecosystem
Shell Script - 1.1 KB - MD5: a6f6ea519c067665a975d16df1002f6c
Code
script showing the steps followed in assembly
Binning of the contigs using MetaBat2.sh
Apr 10, 2025 - Replication Data for: Metagenomic exploration of antimicrobial resistance genes in marine bacteria ecosystem
Shell Script - 961 B - MD5: e8023cf282e973e73ab920bf27a96b59
Code
script showing the binning command used
Bins quality check using checkM.sh
Apr 10, 2025 - Replication Data for: Metagenomic exploration of antimicrobial resistance genes in marine bacteria ecosystem
Shell Script - 1.2 KB - MD5: 03defa4b6dd1570b28d996fb347bead5
Code
scripts showing quality checks process for the resulting bins
Quality check of the samples using FastQC.sh
Apr 10, 2025 - Replication Data for: Metagenomic exploration of antimicrobial resistance genes in marine bacteria ecosystem
Shell Script - 892 B - MD5: 89ebed79a74d940b1b29e41c5b47ff78
Code
script showing the quaity check steps for the raw data
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