The bioscience department focuses on the molecular biology, epidemiology and immunology of infectious diseases with particular emphasis on the development of vaccines and understanding the transmission of pathogens. We work on malaria, viral pathogens, HIV and bacterial disease, and provide strategic direction to the Laboratory Research Platform

Our work on malaria covers the three life-cycle stages; gametocytes (where we are developing a human challenge model to test transmission blocking immunity and profiling the transmitting population in the community and developing markers of infectiousness); blood stage (where we are identifying the merozoite and red cell surface targets of human immunity and examining the role of parasite exposure on host immunity using a systems immunology approach); and pre-erythrocytic stages where we are examining vaccine-induced immunity.

Field surveillance for acute HIV infection and monitoring of a cohort and collaboration with IAVI has facilitated interests in functional assays (specifically the viral inhibition assay) and on the impact of transmitted drug resistance in Kenya.

We are undertaking work on the genomics of malaria, viral pathogens and bacterial pathogens in order to determine what the source of infection is (i.e. “who infects whom”) in collaboration with the Epidemiology and Demography Department.

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11 to 20 of 61 Results
Dec 13, 2024
Wanjiku, Perpetual; Orindi, Benedict; Kimotho, John; Sayed, Shahin; Shah, Reena; Saleh Mansoor; Mwacharo, Jedidah; Maronga, Christopher; Oluoch, Vivian; Karanu, Ann; Shah, Jasmit; Nneka, Zaitun; Ochola-Oyier, Lynette Isabella; Abdi, Abdirahman I.; Dunachie, Susanna; Bejon, Philip; Nduati, Eunice; Ndungu, Francis M., 2024, "Replication Data for: Induction of an early IFN-γ cellular response and high plasma levels of SDF-1α are inversely associated with COVID-19 severity and residence in rural areas in Kenyan patients", https://doi.org/10.7910/DVN/XMTCTW, Harvard Dataverse, V1, UNF:6:JkMDcIXMDJ5GzzCjZ4ra3A== [fileUNF]
This is a replication dataset for the manuscript titled: "Induction of an early IFN-γ cellular response and high plasma levels of SDF-1α are inversely associated with COVID-19 severity and residence in rural areas in Kenyan patients" submitted to the PLOS One journal. The first dataset describes the baseline characteristics of the Kenyan COVID-19 p...
Sep 10, 2024
Kapulu, Melissa C.; Orenge, Francesca; Kimani,Domtila; Kibwana, Elizabeth; Kibet Hillary; Mutahi, Mary; Datoo, Mehreen S.; Bellamy, Duncan; Musembi, Janet; Ngoto, Omar; Rashid, Hamisi; Akinyi, Stellamaris; Mwatasa, Mwaganyuma; Nyamako, Lydia; Keter, Kelvias; Gatheru, Rose; Mutiso, Agnes; Musyoki, Jennifer; Mwacharo, Jedidah; Abebe, Yonas; James, Eric J.; Billingsley, Peter F.; Ngetsa, Caroline; Mosobo, Moses; Makale, Johnstone; Tawa, Brian; Wamae, Kevin; Ochola-Oyier, Lynette I.; Wambua, Juliana; Lawrie, Alison; Ramos-Lopez, Fernando; Roberts, Rachel; Richie, Thomas L.; Sim, B. Kim Lee; Hoffman, Stephen L.; Ewer, Katie J.; Hill, Adrian V. S.; Hamaluba, Mainga.; Bejon, Philip, 2024, "Replication Data for: The malaria vaccine R21 is protective against intradermal but not intravenous Plasmodium falciparum sporozoites in controlled human malaria infection in Kenyan adults", https://doi.org/10.7910/DVN/TNHS14, Harvard Dataverse, V3, UNF:6:uSl7BVIrsuW6q3SVxM0ARA== [fileUNF]
This is a replication dataset for the manuscript titled: "The malaria vaccine R21 is protective against intradermal but not intravenous Plasmodium falciparum sporozoites in controlled human malaria infection in Kenyan adults." We undertook controlled human malaria infections in volunteers vaccinated with the PfCSP-based vaccine R21/Matrix-M, using...
Jun 24, 2024
Lugano, Doreen; Kutima, Bernadette; Kimani, Makobu; Sigilai, Antipa; Gitonga, John N.; Karani, Angela; Akech, Donald; Karia,Boniface; Wairimu, Angela; Lambisia, Arnold; Omuoyo, Donwilliams; Lucinde, Ruth; Ziraba, Abdhalah K.; Newman, Joseph; Bailey, Dalan; Githinji, George; Agoti, Charles N.; Sande, Charles; Kagucia, Wangeci; Ochola-Oyier, Lynette I.; Bejon, Philip; Scott, J. Anthony G.; Agweyu, Ambrose; Warimwe, George M.; Nyagwange, James, 2024, "Replication Data for: Evaluation of population immunity against SARS-CoV-2 variants, EG.5.1, FY.4, BA.2.86, JN.1, and JN.1.4, using samples from two health demographic surveillance systems in Kenya", https://doi.org/10.7910/DVN/6DSHMB, Harvard Dataverse, V1
This is a replication dataset for the manuscript titled:Evaluation of population immunity against SARS-CoV-2 variants, EG.5.1, FY.4, BA.2.86, JN.1, and JN.1.4, using samples from two health demographic surveillance systems in Kenya. SARS-CoV-2 virus continues to mutate leading to emerging variants that escape immunity previously raised by vaccinati...
Jun 3, 2024
Nyagwange, James; Kutima, Bernadette; Mwai, Kennedy, 2024, "Replication Data for: Serum immunoglobulin G and mucosal immunoglobulin A antibodies from prepandemic samples collected in Kilifi, Kenya, neutralize SARS-CoV-2 in vitro", https://doi.org/10.7910/DVN/LBSUYU, Harvard Dataverse, V2
This is a replication dataset for the publication titled: "Serum immunoglobulin G and mucosal immunoglobulin A antibodies from prepandemic samples collected in Kilifi, Kenya, neutralize SARS-CoV-2 in vitro." The dataset used in this study included serum samples collected in 2018 in coastal Kenya from adults for malaria cross-sectional surveys, seru...
Jun 1, 2024 - Harvard Dataverse
Kiyuka, Patience, 2024, "Replication Data for: Understanding the barriers and facilitators of human papillomavirus vaccine uptake in Kwale and Mombasa counties in Kenya; A study protocol", https://doi.org/10.7910/DVN/JCUN7B, Harvard Dataverse, V1
Human papillomavirus (HPV) vaccine has been available since 2006 for adolescent girls and women in an increasing number of countries globally. Evidence suggests that the vaccine is safe, highly effective and essential for protecting against the virus that is responsible for causing cervical cancer, a leading killer disease in women. Our study seeks...
May 31, 2024 - Harvard Dataverse
Kiyuka, Patience, 2024, "Replication Data for: Incorporating findings from a vaccine refusal study to develop a community play to improve understanding of maternal vaccines in rural Kilifi, Kenya.", https://doi.org/10.7910/DVN/IQENQQ, Harvard Dataverse, V1
In this research note, we provide documentation of how we used research findings from a maternal vaccine hesitancy study to develop a community play to address concerns and issues on maternal vaccines in a rural setting of Kilifi County, Kenya. Although prior studies have used theatre to address issues around mental health, HIV, and patient journey...
Apr 15, 2024
Kutima, Bernadette; Kagucia,Wangeci; Mwai, Kennedy; Kimani, Makobu; Sigilai, Antipa; Mugo, Daisy; Karani, Angela; Akech, Donald; Toroitich, Monica; Karia, Boniface; Tuju, James; Ziraba, Abdhalah K.; Bigogo,Godfrey; Ochieng, Caroline; Onyango, Clayton; Lidechi, Shirley; Munywoki,Patrick K.; Uyoga, Sophie; Adetifa, Ifedayo M. O.; Ochola-Oyier,Lynette I.; Bejon, Philip; Scott,J. Anthony G.; Agweyu, Ambrose; Warimwe, George M.; Nyagwange, James, 2023, "Replication Data for: Comparative performance of the InBios SCoV-2 DetectTM IgG ELISA and the in-house KWTRP ELISA in detecting SARS-CoV-2 spike IgG antibodies in Kenyan populations", https://doi.org/10.7910/DVN/FOYVMT, Harvard Dataverse, V2
This is a replication dataset for the manuscript titled "Comparative performance of the InBios SCoV-2 DetectTM IgG ELISA and the in-house KWTRP ELISA in detecting SARS-CoV-2 spike IgG antibodies in Kenyan populations." The SARS-CoV-2 seroprevalence estimates have been carried out by institutions under the Kenya Multi-Site Sero-surveillance (KEMIS)...
Mar 1, 2024 - Harvard Dataverse
Kiyuka, Patience, Moindi Rodgers, Mutua Meshack, Mumba Noni, Shauri Halimu, 2024, "Replication Data for: Assessing risk perceptions that contribute to tetanus toxoid maternal vaccine hesitancy in Kilifi County, Kenya", https://doi.org/10.7910/DVN/2T6T5G, Harvard Dataverse, V1
We present data and the associated survey questionnaire, key informants’ interview, and focus group discussion guides for the manuscript titled “Assessing risk perceptions that contribute to tetanus toxoid maternal vaccine hesitancy in Kilifi County, Kenya” The related project aimed at assessing risk factors that contribute to maternal tetanus toxo...
Feb 6, 2024
Karisa, Jonathan; Ominde, Kelly; Tuwei, Mercy; Bartilol, Brian; Ondieki, Zedekiah; Musani, Harun; Wanjiku, Caroline; Mwikali, Kioko; Babu, Lawrence; Rono, Martin; Eminov, Mumin; Mbogo, Charles; Bejon, Philip; Mwangangi, Joseph; Laroche, Maureen; Maia, Marta, 2023, "Replication Data for: Utility of MALDI-TOF MS for determination of species identity and blood meal sources of primary malaria vectors on the Kenyan coast", https://doi.org/10.7910/DVN/VYQFNO, Harvard Dataverse, V3, UNF:6:QoLvc7/H8dLhBCXE+ecIYw== [fileUNF]
This is a replication dataset for the manuscript titled: "Utility of MALDI-TOF MS for determination of species identity and blood meal sources of primary malaria vectors on the Kenyan coast", published in the Wellcome Open Research journal. The data files contains results on the evaluation of MALDI-TOF MS as a tool for entomological surveillance by...
Dec 14, 2023
Downs, Louise O.; Campbell, Cori; Abouyannis, Michael; Otiende, Mark.; Kapulu, Melissa; Obiero, Christine W.; Hamaluba, Mainga; Ngetsa, Caroline; Andersson, Monique; Githinji, George; Warimwe, George; Baisley,Kathy; Scott, J. Anthony G.; Matthews, Philippa C.; Etyang, Anthony, 2023, "Replication Data for: Where Do Those Data Go? Reuse of screening results from clinical trials to estimate population prevalence of HBV infection in adults in Kilifi, Kenya", https://doi.org/10.7910/DVN/FPUH4R, Harvard Dataverse, V2, UNF:6:j45hG2yDzzDcraiGWjiNSA== [fileUNF]
This is a replication dataset for the manuscript titled: "Where Do Those Data Go? Reuse of screening results from clinical trials to estimate population prevalence of HBV infection in adults in Kilifi, Kenya." . This is a dataset summarising demographic, hepatitis B test results and alanine aminotransferase data from 6 completed different clinical...
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