The bioscience department focuses on the molecular biology, epidemiology and immunology of infectious diseases with particular emphasis on the development of vaccines and understanding the transmission of pathogens. We work on malaria, viral pathogens, HIV and bacterial disease, and provide strategic direction to the Laboratory Research Platform

Our work on malaria covers the three life-cycle stages; gametocytes (where we are developing a human challenge model to test transmission blocking immunity and profiling the transmitting population in the community and developing markers of infectiousness); blood stage (where we are identifying the merozoite and red cell surface targets of human immunity and examining the role of parasite exposure on host immunity using a systems immunology approach); and pre-erythrocytic stages where we are examining vaccine-induced immunity.

Field surveillance for acute HIV infection and monitoring of a cohort and collaboration with IAVI has facilitated interests in functional assays (specifically the viral inhibition assay) and on the impact of transmitted drug resistance in Kenya.

We are undertaking work on the genomics of malaria, viral pathogens and bacterial pathogens in order to determine what the source of infection is (i.e. “who infects whom”) in collaboration with the Epidemiology and Demography Department.

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MS Word - 15.9 KB - MD5: 1ac9cf83114d9f70d1e745feeef5f04f
Code
This table clssifies the genes into different drug classes and thecorresponsing resistance mechanism
Shell Script - 1.1 KB - MD5: a6f6ea519c067665a975d16df1002f6c
Code
script showing the steps followed in assembly
Shell Script - 961 B - MD5: e8023cf282e973e73ab920bf27a96b59
Code
script showing the binning command used
Shell Script - 1.2 KB - MD5: 03defa4b6dd1570b28d996fb347bead5
Code
scripts showing quality checks process for the resulting bins
Shell Script - 892 B - MD5: 89ebed79a74d940b1b29e41c5b47ff78
Code
script showing the quaity check steps for the raw data
MS Word - 14.1 KB - MD5: b16db264ef30cd2f7b61f548cb4e1f08
Data
This contains the 'plus' stress resistnce genes showing metal resistance obtained from the AMRFinderPlus analysis
Tabular Data - 2.7 KB - 3 Variables, 170 Observations - UNF:6:cIvhZZ0tpAGcP66tErs/gQ==
This file contains information about the COI per study participants in the two study locations
Tabular Data - 2.2 KB - 4 Variables, 84 Observations - UNF:6:2x3xglQ7rX9EVvnFgcotRQ==
This file contains information about the genotypes and their frequencies per study location
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