The bioscience department focuses on the molecular biology, epidemiology and immunology of infectious diseases with particular emphasis on the development of vaccines and understanding the transmission of pathogens. We work on malaria, viral pathogens, HIV and bacterial disease, and provide strategic direction to the Laboratory Research Platform

Our work on malaria covers the three life-cycle stages; gametocytes (where we are developing a human challenge model to test transmission blocking immunity and profiling the transmitting population in the community and developing markers of infectiousness); blood stage (where we are identifying the merozoite and red cell surface targets of human immunity and examining the role of parasite exposure on host immunity using a systems immunology approach); and pre-erythrocytic stages where we are examining vaccine-induced immunity.

Field surveillance for acute HIV infection and monitoring of a cohort and collaboration with IAVI has facilitated interests in functional assays (specifically the viral inhibition assay) and on the impact of transmitted drug resistance in Kenya.

We are undertaking work on the genomics of malaria, viral pathogens and bacterial pathogens in order to determine what the source of infection is (i.e. “who infects whom”) in collaboration with the Epidemiology and Demography Department.

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MS Word - 14.1 KB - MD5: b16db264ef30cd2f7b61f548cb4e1f08
Data
This contains the 'plus' stress resistnce genes showing metal resistance obtained from the AMRFinderPlus analysis
Mar 17, 2025
Achieng, Nicole; Kimenyi, K. Muteru; Mgawe, Cavin; Ndwiga, Leonard; Ochola-Oyier, Lynette Isabella, 2025, "Replication Data for: Characterizing Plasmodium falciparum genetic diversity and complexity of infections in clinical malaria infections in Western and Coastal Kenya using the poly-alpha microsatellite marker", https://doi.org/10.7910/DVN/DAHYSD, Harvard Dataverse, V2, UNF:6:1X4CWOSdFdKC1T6kemZecQ== [fileUNF]
This is a replication dataset for the manuscript titled: “Characterizing Plasmodium falciparum genetic diversity and complexity of infections in clinical malaria infections in Western and Coastal Kenya using the poly-alpha microsatellite marker.” Poly-alpha microsatellite marker was genotyped from the isolates by PCR, fragment sizes determined by c...
Tabular Data - 2.7 KB - 3 Variables, 170 Observations - UNF:6:cIvhZZ0tpAGcP66tErs/gQ==
This file contains information about the COI per study participants in the two study locations
Tabular Data - 2.2 KB - 4 Variables, 84 Observations - UNF:6:2x3xglQ7rX9EVvnFgcotRQ==
This file contains information about the genotypes and their frequencies per study location
Tabular Data - 3.1 KB - 3 Variables, 170 Observations - UNF:6:cZtXAGgpzK6x61sI5NhIPg==
This file contains information about the major genotypes per sample per study location that was used for genetic analyses
Tabular Data - 5.0 KB - 4 Variables, 157 Observations - UNF:6:DQ3ivo63Lif4l2PfU1M9Lw==
This file contains age, parasitemia and gender information for the samples from the both study locations.
Mar 17, 2025
Downs, Louise; Orindi, Benedict; Hamaluba, Mainga; Ngetsa, Caroline, 2025, "Replication Data for: Establishing laboratory reference ranges for haematological and biochemical blood parameters in adults and children in Kilifi, Kenya", https://doi.org/10.7910/DVN/RIHHGO, Harvard Dataverse, V3, UNF:6:5xqE7xJIigHSWdz+qoDtHA== [fileUNF]
This is a replication dataset for the manuscript titled: "Establishing laboratory reference ranges for haematological and biochemical blood parameters in adults and children in Kilifi, Kenya" submitted to Wellcome Open Research. The data here were used to derive reference ranges for a number of haematological and biochemical blood parameters for bo...
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