Stephanie Dutkiewicz DARWIN Project Dataverse

The Darwin Project is an initiative, based at Massachusetts Institute of Technology, to advance the development and application of novel models of marine microbes and microbial communities, identifying the relationships of individuals and communities to their environment, connecting cellular-scale processes to global microbial community structure. More details of the project can be found at http://darwinproject.mit.edu/

Part of this project includes the development of the DARWIN marine ecosystem model that is part of the MITgcm (http://mitgcm.org). Code can be downloaded from that website.

There are several version of the DARWIN model, and it continues to evolve. The purpose of this dataverse is to provide output and model code and input fields from various version of the DARWIN model.

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11 to 20 of 37 Results

Simulated monthly 3-D nutrient, Physics (e.g. SST,SSS), Chl Apr 8, 2022 - MONOD_RADTRANS Dutkiewicz, Stephanie, 2022, "Simulated monthly 3-D nutrient, Physics (e.g. SST,SSS), Chl", https://doi.org/10.7910/DVN/NZQEGJ, Harvard Dataverse, V1 monthly averages from 10th year of simulation (Dutkiewicz et al, BG, 2015)
Darwin3 31+16+3 model code, datafiles and parameters Dec 2, 2021 - Darwin3 31+16+3 Dutkiewicz, Stephanie; Jahn, Oliver, 2021, "Darwin3 31+16+3 model code, datafiles and parameters", https://doi.org/10.7910/DVN/ISJQ1W, Harvard Dataverse, V1 MITgcm code (available trhough http://mitgcm.org), with Darwin ecosystem code (available at https://github.com/darwinproject/darwin3). Exact version, modifications (see dar6/code_31+16+3) and input datafiles (see dar6/run33_5) are in the tarball available here. Model parameters are listed in darwin_params.txt and darwin_traits.txt. Equations are pr...
Darwin3 31+16+3 model output: annual mean surface plankton biomass Dec 2, 2021 - Darwin3 31+16+3 Dutkiewicz, Stephanie, 2021, "Darwin3 31+16+3 model output: annual mean surface plankton biomass", https://doi.org/10.7910/DVN/FEWXB4, Harvard Dataverse, V1 Surface carbon biomass of each of the 50 plankton types arranged as follows: 1: pico-phytoplankton, ESD 0.6um (analog of Prochlorococcus) 2: pico-phytoplankton, ESD 0.9um 3: pico-phytoplankton, ESD 1.4um 4: pico-phytoplankton, ESD 2.0um 5: coccolithophores, ESD 3.0um 6: coccolithophores, ESD 4.5um 7: coccolithophores, ESD 6.6um 8: coccolithophores,...
Darwin3 31+16+3(Massachusetts Institute of Technology) Dec 2, 2021 This version of the model was runs with the darwin3 version of the darwin model (available at https://github.com/darwinproject/darwin3). The model is based on Dutkiewicz et al (2021) and resolves the cycling of carbon, phosphorus, nitrogen silica, iron, and oxygen through inorganic, living, dissolved and particulate organic phases (including CDOM)....
Functional Group Biogeography Oct 22, 2021 - Animations of Simulations Jahn, Oliver; Dutkiewicz, Stephanie; Follows, Michael J.; Hill, Christopher N., 2021, "Functional Group Biogeography", https://doi.org/10.7910/DVN/HFGQWR, Harvard Dataverse, V1 Output from ECCO2/GUD simulation. This simulation includes 35 phytoplankton types grouped into 6 different Phytoplankton types and spanning from a cell diameter of 0.6μm to 200 μm. The movie shows four different phytoplankton functional types superimposed over Chl concentrations (white intensity). Red=diatoms; pink=Coccolithophores; green=picophyto...
Phytoplankton Community Biogeography Oct 22, 2021 - Animations of Simulations Jahn, Oliver; Dutkiewicz, Stephanie; Follows, Michael J.; Hill, Christopher N., 2021, "Phytoplankton Community Biogeography", https://doi.org/10.7910/DVN/K1S7KC, Harvard Dataverse, V1 Ecological Provinces from a computer simulation of the marine global ecosystems. Each color represents a different distinct combination of the most dominant phytoplankton function types (as shown in the Venn diagram top right). The opacity indicates the total concentration of phytoplankton biomass: the darker the color, the less phytoplankton – Ani...
Animations of Simulations(Massachusetts Institute of Technology) Oct 22, 2021 Animations of DarwinProject simulations.
GUD IGSM annual surface nutrients Aug 9, 2021 - GUD IGSM Dutkiewicz, Stephanie, 2021, "GUD IGSM annual surface nutrients", https://doi.org/10.7910/DVN/5CEWCL, Harvard Dataverse, V1 Each files contains the annual mean surface (0-10m) nutrient concentration (mmol/m3) for each year from 1991-2110. Included are dissolved inorganic nitrogen (DIN), phosphate (PO4), dissolved iron (FeT), and silicic acid (SIL) Note that the atmospheric-ocean component of the earth system model used to produce the forcing fields has its own internal...
GUD IGSM primary production Aug 9, 2021 - GUD IGSM Dutkiewicz, Stephanie, 2021, "GUD IGSM primary production", https://doi.org/10.7910/DVN/91LPNJ, Harvard Dataverse, V1 Each files contains the annual mean depth integrated primary production (mmol C/m2/s) for years 1991 to 2110 Note that the atmospheric-ocean component of the earth system model used to produce the forcing fields has its own internal interannual variability. Though the frequency of phenomena such as ENSO are captured, they do not occur in same years...
GUD IGSM depth integrated biomass Aug 9, 2021 - GUD IGSM Dutkiewicz, Stephanie, 2021, "GUD IGSM depth integrated biomass", https://doi.org/10.7910/DVN/LWHQNS, Harvard Dataverse, V1 Each files contains the annual mean depth integrated carbon biomass (mmol C/m2) of each of the 51 plankton types for each year 1991-2100. Note that the atmospheric-ocean component of the earth system model used to produce the forcing fields has its own internal interannual variability. Though the frequency of phenomena such as ENSO are captured, th...

Simulated monthly 3-D nutrient, Physics (e.g. SST,SSS), Chl

Apr 8, 2022 - MONOD_RADTRANS

Dutkiewicz, Stephanie, 2022, "Simulated monthly 3-D nutrient, Physics (e.g. SST,SSS), Chl", https://doi.org/10.7910/DVN/NZQEGJ, Harvard Dataverse, V1

monthly averages from 10th year of simulation (Dutkiewicz et al, BG, 2015)

Darwin3 31+16+3 model code, datafiles and parameters

Dec 2, 2021 - Darwin3 31+16+3

Dutkiewicz, Stephanie; Jahn, Oliver, 2021, "Darwin3 31+16+3 model code, datafiles and parameters", https://doi.org/10.7910/DVN/ISJQ1W, Harvard Dataverse, V1

MITgcm code (available trhough http://mitgcm.org), with Darwin ecosystem code (available at https://github.com/darwinproject/darwin3). Exact version, modifications (see dar6/code_31+16+3) and input datafiles (see dar6/run33_5) are in the tarball available here. Model parameters are listed in darwin_params.txt and darwin_traits.txt. Equations are pr...

Darwin3 31+16+3 model output: annual mean surface plankton biomass

Dec 2, 2021 - Darwin3 31+16+3

Dutkiewicz, Stephanie, 2021, "Darwin3 31+16+3 model output: annual mean surface plankton biomass", https://doi.org/10.7910/DVN/FEWXB4, Harvard Dataverse, V1

Surface carbon biomass of each of the 50 plankton types arranged as follows: 1: pico-phytoplankton, ESD 0.6um (analog of Prochlorococcus) 2: pico-phytoplankton, ESD 0.9um 3: pico-phytoplankton, ESD 1.4um 4: pico-phytoplankton, ESD 2.0um 5: coccolithophores, ESD 3.0um 6: coccolithophores, ESD 4.5um 7: coccolithophores, ESD 6.6um 8: coccolithophores,...

Darwin3 31+16+3(Massachusetts Institute of Technology)

Dec 2, 2021

This version of the model was runs with the darwin3 version of the darwin model (available at https://github.com/darwinproject/darwin3). The model is based on Dutkiewicz et al (2021) and resolves the cycling of carbon, phosphorus, nitrogen silica, iron, and oxygen through inorganic, living, dissolved and particulate organic phases (including CDOM)....

Functional Group Biogeography

Oct 22, 2021 - Animations of Simulations

Jahn, Oliver; Dutkiewicz, Stephanie; Follows, Michael J.; Hill, Christopher N., 2021, "Functional Group Biogeography", https://doi.org/10.7910/DVN/HFGQWR, Harvard Dataverse, V1

Output from ECCO2/GUD simulation. This simulation includes 35 phytoplankton types grouped into 6 different Phytoplankton types and spanning from a cell diameter of 0.6μm to 200 μm. The movie shows four different phytoplankton functional types superimposed over Chl concentrations (white intensity). Red=diatoms; pink=Coccolithophores; green=picophyto...

Phytoplankton Community Biogeography

Oct 22, 2021 - Animations of Simulations

Jahn, Oliver; Dutkiewicz, Stephanie; Follows, Michael J.; Hill, Christopher N., 2021, "Phytoplankton Community Biogeography", https://doi.org/10.7910/DVN/K1S7KC, Harvard Dataverse, V1

Ecological Provinces from a computer simulation of the marine global ecosystems. Each color represents a different distinct combination of the most dominant phytoplankton function types (as shown in the Venn diagram top right). The opacity indicates the total concentration of phytoplankton biomass: the darker the color, the less phytoplankton – Ani...

Animations of Simulations(Massachusetts Institute of Technology)

Oct 22, 2021

Animations of DarwinProject simulations.

GUD IGSM annual surface nutrients

Aug 9, 2021 - GUD IGSM

Dutkiewicz, Stephanie, 2021, "GUD IGSM annual surface nutrients", https://doi.org/10.7910/DVN/5CEWCL, Harvard Dataverse, V1

Each files contains the annual mean surface (0-10m) nutrient concentration (mmol/m3) for each year from 1991-2110. Included are dissolved inorganic nitrogen (DIN), phosphate (PO4), dissolved iron (FeT), and silicic acid (SIL) Note that the atmospheric-ocean component of the earth system model used to produce the forcing fields has its own internal...

GUD IGSM primary production

Aug 9, 2021 - GUD IGSM

Dutkiewicz, Stephanie, 2021, "GUD IGSM primary production", https://doi.org/10.7910/DVN/91LPNJ, Harvard Dataverse, V1

Each files contains the annual mean depth integrated primary production (mmol C/m2/s) for years 1991 to 2110 Note that the atmospheric-ocean component of the earth system model used to produce the forcing fields has its own internal interannual variability. Though the frequency of phenomena such as ENSO are captured, they do not occur in same years...

GUD IGSM depth integrated biomass

Aug 9, 2021 - GUD IGSM

Dutkiewicz, Stephanie, 2021, "GUD IGSM depth integrated biomass", https://doi.org/10.7910/DVN/LWHQNS, Harvard Dataverse, V1

Each files contains the annual mean depth integrated carbon biomass (mmol C/m2) of each of the 51 plankton types for each year 1991-2100. Note that the atmospheric-ocean component of the earth system model used to produce the forcing fields has its own internal interannual variability. Though the frequency of phenomena such as ENSO are captured, th...

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