Replication Data for: MEA-NAP

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Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures Nov 7, 2024 Mierau, Susanna; Sit, Timothy; Feord, Rachael; Oluigbo, David, 2024, "Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures", https://doi.org/10.7910/DVN/Z14LWA, Harvard Dataverse, V4, UNF:6:VewDL+MOwDEGVxCIpVSLtA== [fileUNF] This collection includes MATLAB-based code, microelectrode array (MEA) data, and other resources to assist users with our computational tool, the MEA network analysis pipeline (MEA-NAP). Dataverse contents: 1. MEA-NAP.zip - The MATLAB-based code for MEA-NAP version 1.6.0 that was used for the analysis in Sit et al. (2024) Cell Reports Methods...
MEA-NAP-main_v1.10.zip Nov 7, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures ZIP Archive - 37.2 MB - MD5: f5c2271afa73f22ed4da1ba69f7c1e61 Most recent version of MEA-NAP (version 1.10.0) at time of publication of Sit et al. (2024) in Cell Reports Methods. Includes documentation.
MEA-NAP-main_v1.6.0.zip Apr 3, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures ZIP Archive - 20.7 MB - MD5: 47d8771b3177ab0f64587012928dc09a MATLAB-based code for the Microelectrode Array Network Analysis Pipeline (MEA-NAP) version 1.6.0. Downloaded from Github on 04/03/2024. This version was used for the data analysis in Sit et al. (2024). For the most up-to-date version, please see: https://github.com/SAND-Lab/MEA-NAP/
10_fraction of bursts in network bursts.png $10_fraction of bursts in network bursts.png$ Mar 2, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures PNG Image - 144.8 KB - MD5: 2565a7be282d2aac57618b880cd81749
10_fraction of bursts in network bursts.png $10_fraction of bursts in network bursts.png$ Mar 2, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures PNG Image - 146.2 KB - MD5: 48505e4c84b67e78eef4b9538bb74b89
10_fraction of bursts in network bursts.svg Mar 2, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures SVG Image - 50.3 KB - MD5: aedc2dc08139920d3bd14ddaad8a5527
10_fraction of bursts in network bursts.svg Mar 2, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures SVG Image - 74.9 KB - MD5: 785feb5190e868fadf5e43a2e5a20617
1_mean firing rate per electrode (Hz).png Mar 2, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures PNG Image - 311.5 KB - MD5: 4982f166884f29d49a2f7e943fed29d9
1_mean firing rate per electrode (Hz).png Mar 2, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures PNG Image - 263.7 KB - MD5: c57d79a6696a20f87f669cb628428ec1
1_mean firing rate per electrode (Hz).svg Mar 2, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures SVG Image - 404.3 KB - MD5: 5b61b12b5e1b327efbe0adff69485aae

Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures

Nov 7, 2024

Mierau, Susanna; Sit, Timothy; Feord, Rachael; Oluigbo, David, 2024, "Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures", https://doi.org/10.7910/DVN/Z14LWA, Harvard Dataverse, V4, UNF:6:VewDL+MOwDEGVxCIpVSLtA== [fileUNF]

This collection includes MATLAB-based code, microelectrode array (MEA) data, and other resources to assist users with our computational tool, the MEA network analysis pipeline (MEA-NAP). ** Dataverse contents: ** 1. MEA-NAP.zip - The MATLAB-based code for MEA-NAP version 1.6.0 that was used for the analysis in Sit et al. (2024) Cell Reports Methods...

MEA-NAP-main_v1.10.zip

Nov 7, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures

ZIP Archive - 37.2 MB -

Most recent version of MEA-NAP (version 1.10.0) at time of publication of Sit et al. (2024) in Cell Reports Methods. Includes documentation.

MEA-NAP-main_v1.6.0.zip

Apr 3, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures

ZIP Archive - 20.7 MB -

MATLAB-based code for the Microelectrode Array Network Analysis Pipeline (MEA-NAP) version 1.6.0. Downloaded from Github on 04/03/2024. This version was used for the data analysis in Sit et al. (2024). For the most up-to-date version, please see: https://github.com/SAND-Lab/MEA-NAP/

10_fraction of bursts in network bursts.png

$10_fraction of bursts in network bursts.png$

Mar 2, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures

PNG Image - 144.8 KB -

10_fraction of bursts in network bursts.png

$10_fraction of bursts in network bursts.png$

Mar 2, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures

PNG Image - 146.2 KB -

10_fraction of bursts in network bursts.svg

Mar 2, 2024 - Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures

SVG Image - 50.3 KB -

10_fraction of bursts in network bursts.svg