SarcGraph Dataverse

Harvard Dataverse for SarcGraph: an open-source toolkit that automates detection, tracking, and analysis of sarcomeres in hiPSC-derived cardiomyocytes. GitHub

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1 to 10 of 16 Results

Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph Jun 26, 2025 Mohammadzadeh, Saeed; Lejeune, Emma, 2025, "Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph", https://doi.org/10.7910/DVN/3AIJKU, Harvard Dataverse, V2 This dataset contains all supplementary data for the paper “Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph.” It includes pre-trained z-disc classifier model checkpoints, and the associated labeled data used for training and evaluation.
model_0.ckpt Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph Unknown - 159.9 MB - MD5: b041e114c99e9092c092ed0dbfd3c86c Fine-tuned EfficientNet v2 model #0 (SimCLR framework) for z-disc classification in hiPSC-CM images.
model_0.pt Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph Unknown - 2.9 MB - MD5: f7a0ea0030c286115fcc627449a67f95 Pre-trained MLP ensemble model #0 (DINO→MLP) for Z-disc classification
model_1.ckpt Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph Unknown - 159.9 MB - MD5: 877c224070501f461387ed7234d3dc26 Fine-tuned EfficientNet v2 model #1 (SimCLR framework) for z-disc classification in hiPSC-CM images.
model_1.pt Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph Unknown - 2.9 MB - MD5: bdd839917ee649fadf14d3ca0e62b2e1 Pre-trained MLP ensemble model #1 (DINO→MLP) for Z-disc classification
model_2.ckpt Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph Unknown - 159.9 MB - MD5: 9efe6184e6ab4912b001b1dcdac931e4 Fine-tuned EfficientNet v2 model #2 (SimCLR framework) for z-disc classification in hiPSC-CM images.
model_2.pt Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph Unknown - 2.9 MB - MD5: 5e487972dc9de0b6eaab377fc7625f6f Pre-trained MLP ensemble model #2 (DINO→MLP) for Z-disc classification
model_3.ckpt Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph Unknown - 159.9 MB - MD5: e7600b624524e5dd1c0085bd81b35f8e Fine-tuned EfficientNet v2 model #3 (SimCLR framework) for z-disc classification in hiPSC-CM images.
model_3.pt Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph Unknown - 2.9 MB - MD5: 46d45dd091a14a2aab7e5a7cbf3582dc Pre-trained MLP ensemble model #3 (DINO→MLP) for Z-disc classification
model_4.ckpt Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph Unknown - 159.9 MB - MD5: 1cced77b0c327628f7df14bbbbe8e60b Fine-tuned EfficientNet v2 model #4 (SimCLR framework) for z-disc classification in hiPSC-CM images.

Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph

Jun 26, 2025

Mohammadzadeh, Saeed; Lejeune, Emma, 2025, "Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph", https://doi.org/10.7910/DVN/3AIJKU, Harvard Dataverse, V2

This dataset contains all supplementary data for the paper “Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph.” It includes pre-trained z-disc classifier model checkpoints, and the associated labeled data used for training and evaluation.

model_0.ckpt

Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph

Unknown - 159.9 MB -

Fine-tuned EfficientNet v2 model #0 (SimCLR framework) for z-disc classification in hiPSC-CM images.

model_0.pt

Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph

Unknown - 2.9 MB -

Pre-trained MLP ensemble model #0 (DINO→MLP) for Z-disc classification

model_1.ckpt

Jun 26, 2025 - Supplementary Data for Quantifying HiPSC-CM Structural Organization at Scale with Deep Learning-Enhanced SarcGraph

Unknown - 159.9 MB -

Fine-tuned EfficientNet v2 model #1 (SimCLR framework) for z-disc classification in hiPSC-CM images.