1 to 10 of 66 Results
Apr 3, 2025
Musundi, Sebastian, 2024, "Replication Data for: Emergence and transmission dynamics of the FY.4 Omicron Subvariant", https://doi.org/10.7910/DVN/VPWUXN, Harvard Dataverse, V2
This is a replication dataset for the manuscript titled: "Emergence and transmission dynamics of the FY.4 Omicron Subvariant ". SARS-CoV-2 FY.4 sequences previously sequenced from KEMRI-Wellcome Trust Research Programme were retrieved together with other FY.4 global sequences sourced from Global Initiative on Sharing All Influenza Data (GISAID).Phy... |
Lambisia, Arnold W.; Katama, Esther N.; Ochola-Oyier, Isabella; Agoti, Charles N., 2025, "Replication Data for: Epidemiological insights from genomic analyses of the SARS-CoV-2 infection wave in coastal Kenya, 2023-24", https://doi.org/10.7910/DVN/BMCJTI, Harvard Dataverse, V1, UNF:6:+Fycv3F2m7MyWKQZrmgbBw== [fileUNF]
This is a replication dataset for the manuscript titled: "Epidemiological insights from genomic analyses of the SARS-CoV-2 infection wave in coastal Kenya, 2023-24." The datasets are part of ongoing SARS-CoV-2 surveillance either in the outpatient, inpatient and community within the KHDSS in coastal Kenya. Dataset1 shows the temporal distribution o... |
Morobe, John M.; Kamau, Everlyn; Luka, Martha M.; Murunga, Nickson; Lewa, Clement; Mutunga, Martin; Bigogo, Godfrey; Nyawanda, Brian; Onyango, Clayton; Nokes, David James; Agoti, Charles N.; Munywoki, Patrick K., 2024, "Replication Data for: Temporal distribution of rhinovirus types in multiple regions across Kenya over one year, 2014.", https://doi.org/10.7910/DVN/CBHVTA, Harvard Dataverse, V2, UNF:6:sQTYC5N6hrmEF7vFz/tsTQ== [fileUNF]
This is a replication dataset for the manuscript titled: "Temporal distribution of rhinovirus types in multiple regions across Kenya over one year, 2014". The dataset comprises demographic and clinical details of patients with acute respiratory illness across different age groups. Data collection spanned from January to December 2014 across three h... |
Lambisia, Arnold W.; Mutunga, Martin; Katama, Esther N.; Agoti, Charles N.; Houldcroft, Charlotte J., 2024, "Replication Data for: Multi-species co-circulation of adenoviruses identified by next generation sequencing during an outbreak in coastal Kenya in 2023", https://doi.org/10.7910/DVN/XCHBND, Harvard Dataverse, V1, UNF:6:kMf51uUMNvnlcQnhVs8Q7g== [fileUNF]
This is a replication dataset for the manuscript titled: "Multi-species co-circulation of adenoviruses identified by next-generation sequencing during an outbreak in coastal Kenya in 2023 The main dataset is part of long-term surveillance of enteric viruses associated with diarrhoea. These datasets are part of long-term surveillance of enteric viru... |
Dec 15, 2023
Morobe, John M.; Moraa, Edidah; Lambisia, Anorld W.; Mutunga, Martin; Kiage, Brenda; Katama, Esther N.; Makori, Timothy; Nyiro, Joyce U.; Ndwiga, Leonard; Nyagwange, James; Sande, Charles; Ochola-Oyier, Isabella; Holmes, Edward C.; Nokes, D. James; Githinji, George; Agoti, Charles N., 2023, "Replication Data for: Emergence and predominance of novel influenza A (H3N2) subclade (3C.2a1b.2a.2a.3a.1) in Kenya and globally in 2023", https://doi.org/10.7910/DVN/5US8MM, Harvard Dataverse, V1, UNF:6:TC88PD6abRiegX7HC538JA== [fileUNF]
This is a replication dataset for the manuscript titled: "Emergence and predominance of novel influenza A (H3N2) subclade (3C.2a1b.2a.2a.3a.1) in Kenya and globally in 2023." The related study is part of surveillance carried in Kilifi County in Kenya. The surveillance exist under two platforms: (a) pediatric inpatient surveillance of severe and ver... |
Mburu, Maureen w.; Katama, Esther N.; Lambisia, Arnold W., 2023, "Replication Data for: Genomic epidemiology of SARS-CoV-2 in Sudan: A retrospective analysis 2020-2022", https://doi.org/10.7910/DVN/782VRG, Harvard Dataverse, V1, UNF:6:4dXn6/Gg1O+yPYg0IxCH7Q== [fileUNF]
This is a replication dataset for the manuscript titled:" Genomic epidemiology of SARS-CoV-2 in Sudan: A retrospective analysis 2020-2022." The dataset presented is part of a study that investigated the genomic epidemiology of SARS-CoV-2 in Sudan. This dataset contains results of samples positive for SARS-COV-2 by real-time PCR for the period 2020-... |
Murunga, Nickson; Nyawanda, Bryan; Nyiro, Joyce U.; Otieno, Grieven P.; Kamau, Everlyn; Agoti, Charles N.; Lewa, Clement; Gichuki, Alex; Mutunga, Martin; Otieno, Nancy; Mayieka, Lilian; Ochieng, Melvin; Kikwai, Gilbert; Hunsperger, Elizabeth; Onyango, Clayton; Emukule, Gideon; Bigogo, Godfrey; Verani, Jennifer R.; Chaves, Sandra S.; Nokes, David James; Munywoki, Patrick K., 2022, "Replication Data for: Surveillance of respiratory viruses at health facilities from across Kenya, 2014", https://doi.org/10.7910/DVN/VFCZN4, Harvard Dataverse, V7, UNF:6:ek1fu3CwyMKIiLVkPQPC8Q== [fileUNF]
This is a replication dataset for the manuscript titled: "Surveillance of respiratory viruses at health facilities from across Kenya, 2014." These data originated from surveillance carried out in 11 sites across Kenya. It contains patients' demographics and clinical features, samples tested, samples positive, respiratory virus targets, years and mo... |
Luka, Martha M.; Otieno, James R.; Kamau, Everlyn; Morobe, John M.; Murunga, Nickson; Adema, Irene; Nyiro, Joyce U.; Macharia,Peter M.; Bigogo, Godfrey; Otieno, Nancy A.; Nyawanda, Bryan O.; Rabaa, Maia A.; Emukule, Gideon O.; Onyango, Clayton; Munywoki, Patrick K.; Agoti, Charles N.; Nokes, D.James, 2023, "Replication Data for: Rhinovirus transmission dynamics across different social structures", https://doi.org/10.7910/DVN/KSOPCI, Harvard Dataverse, V1, UNF:6:5Iz4Zr91WomokGKyjKfRMA== [fileUNF]
This is a replication dataset for the publication titled: "Rhinovirus transmission dynamics across different social structures ." This dataset aims to compare rhinovirus dynamics from five previous studies conducted in Kenya in four different social structures. The studies are (i) intensive household surveillance in coastal Kenya (Dec 2009 - May 20... |
Lambisia, Arnold W.; Murunga, Nickson; Mutunga, Martin; Cheruiyot, Robinson; Maina, Grace; Makori, Timothy; Nokes, D.James; Agoti, Charles N., 2023, "Replication Data for: Temporal changes in the positivity rate of common enteric viruses among paediatric admissions in coastal Kenya, in the period spanning the COVID-19 pandemic, 2019-2022", https://doi.org/10.7910/DVN/EG6MEH, Harvard Dataverse, V1, UNF:6:prw/VZIIJHN4aFHKLaZ63w== [fileUNF]
This is a replication dataset for the manuscript titled "Temporal changes in the positivity rate of common enteric viruses among paediatric admissions in coastal Kenya, in the period spanning the COVID-19 pandemic, 2019-2022." The main dataset is part of long-term surveillance of enteric viruses associated with diarrhoea. These datasets are part of... |
Mwanga, Mike J.; Lambisia, Anorld W.; Morobe, John M.; Murunga, Nickson; Cheruiyot, Robinson; Moraa, Edidah O.; Ndwiga, Leonard; Mutunga, Martin; Laura,Guzman-Rincon; Musyoki, Jennifer; Sande, Charles; Mwangangi, Joseph; Bejon, Philip; Oyier, Isabella Lynette-Ochola; Nokes, D. James; Agoti, Charles N.; Nyiro, Joyce; Githinji, George, 2023, "Replication Data for: A new Omicron lineage with Spike Y451H mutation dominating a new COVID-19 wave in Kilifi, Coastal Kenya: March-May 2023", https://doi.org/10.7910/DVN/ZMGR5P, Harvard Dataverse, V2, UNF:6:q6pTyD3YKStTyrKYHjqbfg== [fileUNF]
This dataset is part of a study that investigated the genomic epidemiology of SARS-CoV-2 in Kenya. This dataset contains results of samples positive for SARS-COV-2 by real-time PCR for the period 1st January to 27th May 2023 from Kilifi. Aside from the samples tested and results of the tests, it also contains the patients’ sociodemographic characte... |
