41 to 50 of 66 Results
Mar 9, 2020
Kamau, Everlyn; Otieno, James Richard; Murunga, Nickson; Oketch, John W.; Ngoi, Joyce M.; de Laurent, Zaydah R.; Mwema, Anthony; Nyiro, Joyce U.; Agoti, Charles N.; Nokes, D. James, 2020, "Replication Data for: Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17", https://doi.org/10.7910/DVN/RYISUE, Harvard Dataverse, V1
Replication datasets of the KHDSS RSVB genomes paper. This dataset includes, excel datasheets, sequence alignments and BEAST xml files, which can be used to replicate the analysis and figures described in the paper. The data is part of the KHDSS study conducted to investigate surveillance of respiratory viruses in outpatient setting (KHDSS) |
Feb 17, 2020
Nyiro, Joyce U.; Murunga, Nickson; Nokes, D. James, 2019, "Replication Data for: Gestational Age at Attendance for Antenatal Care as a Potential Factor for the Success of a Maternal Respiratory Syncytial Virus (RSV) Vaccine Program in Coastal Kenya", https://doi.org/10.7910/DVN/TM8YHW, Harvard Dataverse, V2, UNF:6:lpOexfMo9+R6GY7mlDifAQ== [fileUNF]
This replication dataset contains data from pregnant women from HDSS area in Siaya (Lwak), Nairobi (Kibera) and KEMRI-WTRP HDSS area, Kilifi. Variables include records on gestational age at attendance for ANC care, tetanus vaccine uptake, birth outcomes, socio-cultural factors, obstetric history and other demographic details. |
Otieno, Grieven P.; Bottomley, Christian; Khagayi, Sammy; Ogwel, Billy; Nokes, D. James, 2019, "Replication Data for: Impact of the introduction of rotavirus vaccine on hospital admissions for diarrhoea among children in Kenya: A controlled interrupted time series analysis", https://doi.org/10.7910/DVN/PH4COG, Harvard Dataverse, V1
These data include monthly counts of hospital admissions in Kilifi county hospital and Siaya county and referral hospital among children aged <5 years and residents of either the Kilifi Health and Demographic surveillance system or the Siaya Health and Demographic surveillance system. The admissions monthly counts are stratified into all admissions... |
Oketch, John W.; Kamau, Everlyn; Otieno, Grieven P.; Otieno, James R.; Agoti, Charles N.; Nokes, D. James, 2019, "Replication Data for: Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007-2016", https://doi.org/10.7910/DVN/MJPRLV, Harvard Dataverse, V1, UNF:6:z6/ou+m+hgyBHz1x9okgbQ== [fileUNF]
These data include demographic, clinical results and sequence data obtained from a hospital-based surveillance of acute respiratory infections among children aged <5 years. Nasal swabs collected from these children were tested for HMPV and other respiratory viral infections using Real time PCR. Samples that tested positive for HMPV were later typed... |
Aug 5, 2019
Kamau, Everlyn; Nokes, David James, 2019, "Replication Data for: Whole genome sequencing and phylogenetic analysis of Human metapneumovirus strains from Kenya and Zambia", https://doi.org/10.7910/DVN/TVB65V, Harvard Dataverse, V1
Replication dataset for plotting Figure 2 and Supplementary Figure 2: The average pairwise identities were calculated using the sequence data described in the article in Geneious R8.1.5 (https://www.geneious.com). The plots were done in R 3.5.3. |
Jul 18, 2019
Agoti, Charles N.; Phan, My V. T.; Munywoki, Patrick K.; Githinji, George; Medley, Graham F.; Cane, Patricia A.; Kellam, Paul; Cotten, Matthew; Nokes, D. James, 2019, "Replication Data for: Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant", https://doi.org/10.7910/DVN/DUCQWE, Harvard Dataverse, V1, UNF:6:pkEWKbntsO5Q/dyzI9kqew== [fileUNF]
This dataset contains whole genomic sequences (WGS) obtained from participants enrolled in a household study undertaken within Kilifi County, located in coastal Kenya. In the study, 47 households (HH) scattered across an area of approximately 21 km2 were followed up over a 6-month period beginning December 2009 and ending June 2010 coinciding with... |
Apr 8, 2019
Brand, Samuel P.C.; Munywoki, Patrick K.; Walumbe, David; Keeling, Matt J.; Nokes, D. james, 2019, "Replication Data for: Reducing RSV hospitalisation in a lower-income country by vaccinating mothers-to-be and their households", https://doi.org/10.7910/DVN/AR9IBC, Harvard Dataverse, V1
These dataset(s) contain RSV hospitalization data, individual type distributions, and household type distributions. We developed a mathematical model for simulating RSV transmission amongst households in Kilifi county. The model was parameterized using anonymised datasets generated from the Kilifi Demographic and Health surveillance system (KDHSS),... |
Nyasimi, Festus M.; Owour, Collins; Agoti, Charles N.; Gichuki, Alex M.; Otieno, Grieven P.; Otieno, James R.; Githinji, George; Nyiro, Joyce U.; Nokes, David James, 2019, "Replication Data for: Influenza B virus genomic diversity across a single epidemic season in coastal Kenya", https://doi.org/10.7910/DVN/OE6TS2, Harvard Dataverse, V1, UNF:6:X3V45rBvfjGz9/291Pw34w== [fileUNF]
The data used in this analysis arises from a larger study to characterize the transmission pathways of viral respiratory infections in Kilifi County. Two sets of samples were utilized in this study: (1) Data collected from patients presenting in 9 out-patient health facilities within the KHDSS area with symptoms of respiratory infection. The main s... |
Nyiro, Joyce U.; Mwango, Lillian; Nokes, David James, 2019, "Replication Data for: Agreement between ELISA and Plaque Reduction Neutralisation Assay in Detection of Respiratory Syncytial Virus Specific Antibodies in a Birth Cohort from Kilifi, Coastal Kenya", https://doi.org/10.7910/DVN/K3LS7M, Harvard Dataverse, V1, UNF:6:cXM/Pb4otN6UNHbP6wuvDA== [fileUNF]
This data was created from a database generated through a Kilifi birth Cohort (KBC) study conducted at the maternity ward of Kilifi County Hospital from 2002-2007. Blood samples and data were collected from infants who were participants of the KBC study. Blood samples were screened for RSV specific antibodies using plaque reduction neutralisation t... |
Githinji, George, 2019, "Replication Data for: Assessing the utility of minority variant composition in elucidating RSV transmission pathways", https://doi.org/10.7910/DVN/DITXEX, Harvard Dataverse, V1
These data include epidemiological profiles derived from a community household study of respiratory syncytial virus in coast Kenya. The original datasets have been described previously in http://doi.org/10.1093/infdis/jit828 and http://doi.org/10.1093/ve/vex006 but in brief, swabs were collected twice weekly from all members of 47 households in Kil... |
