51 to 60 of 66 Results
Kamau, Everlyn; Onyango, Clayton; Nokes, David James; Munywoki, Patrick K., 2018, "Replication Data for: An intensive, active surveillance reveals high rhinovirus diversity driving continuous invasion of households", https://doi.org/10.7910/DVN/NDJFNZ, Harvard Dataverse, V1, UNF:6:nE6Q7QGJehJrFOCel54AXQ== [fileUNF]
This dataset contains demographic and laboratory results of human rhinovirus for samples collected in a household survey study in rural coastal Kenya. The dataset contains infection episodes of HRV serotypes at individual and household level. Data was collected in December 2009 to June 2010. |
Kombe, Ivy K.; Munywoki, Patrick K.; Baguelin, Marc; Nokes, David James; Medley, Graham F., 2018, "Replication dataset for: Model-based estimates of transmission of respiratory syncytial virus within households", https://doi.org/10.7910/DVN/BPSZZS, Harvard Dataverse, V1, UNF:6:0z4G1wXNR3nKnLH2sQgKXw== [fileUNF]
The main data include respiratory syncytial virus (RSV) concentration measured by quantitative PCR from nasopharyngeal swab samples collected from children and adults during a longitudinal study of viral transmission among households in rural Kenya. The parent study has been described elsewhere, but in brief, swabs were collected twice weekly from... |
Mwanga, Mike J.; Owor, Betty E.; Njeru, Regina W.; Mugo, Robert; Ngama, Mwanajuma; Otieno, Grieven P; Nokes, D. James; Agoti, Charles N., 2018, "Replication Data for: Molecular characterization of rotavirus group A strains circulating prior to vaccine introduction in rural coastal Kenya, 2002-2013", https://doi.org/10.7910/DVN/LVGYYW, Harvard Dataverse, V1, UNF:6:170PUVTBOdWErgXf/DJitg== [fileUNF]
These data were derived from stool samples collected from children with acute gastroenteritis, who reported to Kilifi County Hospital, with diarrhoea symptoms. The surveillance was conducted between January 2002 to December 2004 and January 2010 to December 2013. The study was aimed at describing the distribution, circulation patterns and diversity... |
Oct 9, 2018
Otieno, James R.; Agoti, Charles N.; Cotten, Matthew; Lemey, Philippe; Nokes, D. James, 2018, "Replication Data for: Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and evolutionary dynamics of RSV genotype ON1 strains", https://doi.org/10.7910/DVN/0CJXMA, Harvard Dataverse, V1
This study is part of ongoing surveillance of respiratory viruses within Kilifi County, coastal Kenya, and across the country that is aimed at understanding the epidemiology and disease burden of respiratory viruses in this region (Nokes et al. 2009). Two sets of samples were used in the current analysis: (1) samples collected from children (under... |
Mohammed, Khadija Said; Githinji, George, 2018, "Replication Data for: Evaluating the Performance of Tools Used to Call Minority Variants from Whole Genome Short-Read Data", https://doi.org/10.7910/DVN/ZIO43M, Harvard Dataverse, V5, UNF:6:PJqmV9vNQ9wsd+4PO+h8Jw== [fileUNF]
Several minority variant callers have been developed to describe the minority variants sub-populations from whole genome sequence data. These tools differ based on bioinformatics and statistical approaches used to distinguish between real errors and relevant low-frequency variants. This project evaluated the diagnostic performance of four published... |
Morobe, John M.; Nyiro, Joyce U.; Brand, Samuel; Kamau, Everlyn M.; Munywoki, Patrick K.; Agoti, Charles N.; Nokes, David James, 2018, "Replication Data for: Human Rhinovirus Spatial-Temporal Epidemiology in Rural Coastal Kenya, 2015-2016, Observed Through Outpatient Surveillance", https://doi.org/10.7910/DVN/DUQNDX, Harvard Dataverse, V1, UNF:6:5JRqwfP6OTLFNCN4OdODXg== [fileUNF]
Data used in this analysis was created from a database generated through surveillance to characterize the transmission pathways of viral respiratory infections in Kilifi County. Data was collected from patients presenting in 9 out-patient health facilities within the KHDSS area with symptoms of respiratory infection. The study was conducted from De... |
Morpeth, Susan C.; Munywoki, Patrick K.; Hammitt, Laura L.; Bett, Anne; Bottomley, Christian; Onyango, Clayton O.; Murdoch, David R; Nokes, David James; Scott, J. Anthony G., 2018, "Replication Data for: Nasopharyngeal pneumococcal concentration among children in a longitudinal study of household respiratory virus transmission in Kilifi, Kenya", https://doi.org/10.7910/DVN/A0AXNN, Harvard Dataverse, V1, UNF:6:ysyP5ViCU2welEjs2wgf+g== [fileUNF]
These data include pneumococcal concentration measured by quantitative PCR from nasopharyngeal swab samples collected from children during a longitudinal study of viral transmission among households in rural Kenya. The parent study has been described elsewhere, but in brief, swabs were collected twice weekly from all members of 47 households in Kil... |
Nyiro, Joyce Uchi; Nokes, David James; Otieno, Grieven, 2018, "Replication Data for: Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya: baseline epidemiological observations", https://doi.org/10.7910/DVN/ZX7NS4, Harvard Dataverse, V3, UNF:6:4D9I073fM0F3LdQaGE7SVQ== [fileUNF]
This data was created from a database generated through a surveillance to characterize the transmission pathways of viral respiratory infections in Kilifi County. Data was collected from patients presenting in nine outpatient health facilities within the KHDSS area with symptoms of respiratory infection. The study was conducted from December 2015 t... |
Kiyuka, Patience K.; Munywoki, Patrick K.; Nokes, David James; Cotten, Matthew, 2018, "Replication Data for: Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya", https://doi.org/10.7910/DVN/62MTQC, Harvard Dataverse, V1
This dataset contains demographic and laboratory results of human corona virus for samples collected in a household survey study in rural coastal Kenya. Data was collected in December 2009 to June 2010. |
Agoti, C.N.; Munywoki, P.K.; Cotten, M.; Nokes, D.J., 2018, "Replication Data for: Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis.", https://doi.org/10.7910/DVN/L9NFPN, Harvard Dataverse, V1
Detailed information on the source, spread and evolution of respiratory syncytial virus (RSV) during seasonal community outbreaks remains sparse. Molecular analyses of attachment (G) gene sequences from hospitalized cases suggest that multiple genotypes and variants co-circulate during epidemics and that RSV persistence over successive seasons is c... |
