Cryo2StructData

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1 to 10 of 23 Results

Cryo2StructData Metadata Feb 15, 2024 Giri, Nabin; Wang, Liguo; Cheng, Jianlin, 2023, "Cryo2StructData Metadata", https://doi.org/10.7910/DVN/JMN60H, Harvard Dataverse, V3 An Excel sheet named as metadata.xlsx contains the relevant information for each cryo-EM density map present in Cryo2StructData dataset. Specifically, each row of the sheet contains the EMD ID of the density map, it's corresponding PDB code, density map's resolution, structure determination method, the software used to determine the density map, th...
metadata.xlsx Feb 15, 2024 - Cryo2StructData Metadata MS Excel Spreadsheet - 1.2 MB - MD5: 2ff929589768e92edddd034eefb47f04 An Excel sheet containing all the relevant information for each cryo-EM density map present in Cryo2StructData dataset.
Cryo2StructData : Full Dataset Nov 4, 2023 - Cryo2StructData : Full Giri, Nabin; Wang, Liguo; Cheng, Jianlin, 2023, "Cryo2StructData : Full Dataset", https://doi.org/10.7910/DVN/FCDG0W, Harvard Dataverse, V2 This repository contains the complete Cryo2StructData dataset, which encompasses 7,392 density maps. The data are organized based on EMD-IDs.
EMD_2.zip Nov 4, 2023 - Cryo2StructData : Full Dataset ZIP Archive - 157.2 GB - MD5: 7fc22177f74af840471c14987a821940 Cryo-EM density maps of EMD-IDs starting with 2.
Cryo2StructData : Test Dataset Oct 26, 2023 Giri, Nabin; Wang, Liguo; Cheng, Jianlin, 2023, "Cryo2StructData : Test Dataset", https://doi.org/10.7910/DVN/2GSSC9, Harvard Dataverse, V1 This repository contains the Cryo2StructData test dataset, incorporating a collection of 390 density maps. These density maps are intended for the purpose of testing AI-based models, providing valuable resources for the evaluation of their performance.
test.zip Oct 26, 2023 - Cryo2StructData : Test Dataset ZIP Archive - 28.1 GB - MD5: 37966546f1190b1351ccebf02cca99cd
Cryo2StructData : Small Subsample Dataset Oct 26, 2023 - Cryo2StructData : Small Subset Giri, Nabin; Wang, Liguo; Cheng, Jianlin, 2023, "Cryo2StructData : Small Subsample Dataset", https://doi.org/10.7910/DVN/CGUENL, Harvard Dataverse, V1 This repository comprises the smaller subset of Cryo2StructData. From the full Cryo2StructData dataset, we extracted a reduced subset consisting of 1867 curated density maps, representing 25% of the original Cryo2StructData collection.
small_dataset.zip Oct 26, 2023 - Cryo2StructData : Small Subsample Dataset ZIP Archive - 87.4 GB - MD5: 30876ed6ed452ec72624338fd10c8902
Cryo2StructData : Trained Model and Data Splits (Small Subset) Oct 26, 2023 - Cryo2StructData : Small Subset Giri, Nabin; Wang, Liguo; Cheng, Jianlin, 2023, "Cryo2StructData : Trained Model and Data Splits (Small Subset)", https://doi.org/10.7910/DVN/DTV4JF, Harvard Dataverse, V1 This repository includes the trained transformer-based model for the small subset Cryo2StructData dataset, as well as the training and validation split files. These split files categorize density map EMD-IDs into low, medium, and high resolutions. The training and validation sets contain 1680 and 187 density maps, respectively, with a split ratio o...
ResolutionBasedSplits.xlsx Oct 26, 2023 - Cryo2StructData : Trained Model and Data Splits (Small Subset) MS Excel Spreadsheet - 25.9 KB - MD5: 3b6855fc33e7b5951a551a5ec47e0b67 Train and Validation Splits Based on Resolution for Small Subset of Cryo2StructData dataset.

Cryo2StructData Metadata

Feb 15, 2024

Giri, Nabin; Wang, Liguo; Cheng, Jianlin, 2023, "Cryo2StructData Metadata", https://doi.org/10.7910/DVN/JMN60H, Harvard Dataverse, V3

An Excel sheet named as metadata.xlsx contains the relevant information for each cryo-EM density map present in Cryo2StructData dataset. Specifically, each row of the sheet contains the EMD ID of the density map, it's corresponding PDB code, density map's resolution, structure determination method, the software used to determine the density map, th...

metadata.xlsx

Feb 15, 2024 - Cryo2StructData Metadata

MS Excel Spreadsheet - 1.2 MB -

An Excel sheet containing all the relevant information for each cryo-EM density map present in Cryo2StructData dataset.

Cryo2StructData : Full Dataset

Nov 4, 2023 - Cryo2StructData : Full

Giri, Nabin; Wang, Liguo; Cheng, Jianlin, 2023, "Cryo2StructData : Full Dataset", https://doi.org/10.7910/DVN/FCDG0W, Harvard Dataverse, V2

This repository contains the complete Cryo2StructData dataset, which encompasses 7,392 density maps. The data are organized based on EMD-IDs.

EMD_2.zip

Nov 4, 2023 - Cryo2StructData : Full Dataset

ZIP Archive - 157.2 GB -

Cryo-EM density maps of EMD-IDs starting with 2.

Cryo2StructData : Test Dataset

Oct 26, 2023

Giri, Nabin; Wang, Liguo; Cheng, Jianlin, 2023, "Cryo2StructData : Test Dataset", https://doi.org/10.7910/DVN/2GSSC9, Harvard Dataverse, V1

This repository contains the Cryo2StructData test dataset, incorporating a collection of 390 density maps. These density maps are intended for the purpose of testing AI-based models, providing valuable resources for the evaluation of their performance.

test.zip

Oct 26, 2023 - Cryo2StructData : Test Dataset

ZIP Archive - 28.1 GB -

Cryo2StructData : Small Subsample Dataset

Oct 26, 2023 - Cryo2StructData : Small Subset

Giri, Nabin; Wang, Liguo; Cheng, Jianlin, 2023, "Cryo2StructData : Small Subsample Dataset", https://doi.org/10.7910/DVN/CGUENL, Harvard Dataverse, V1

This repository comprises the smaller subset of Cryo2StructData. From the full Cryo2StructData dataset, we extracted a reduced subset consisting of 1867 curated density maps, representing 25% of the original Cryo2StructData collection.

small_dataset.zip

Oct 26, 2023 - Cryo2StructData : Small Subsample Dataset

ZIP Archive - 87.4 GB -

Cryo2StructData : Trained Model and Data Splits (Small Subset)

Oct 26, 2023 - Cryo2StructData : Small Subset

Giri, Nabin; Wang, Liguo; Cheng, Jianlin, 2023, "Cryo2StructData : Trained Model and Data Splits (Small Subset)", https://doi.org/10.7910/DVN/DTV4JF, Harvard Dataverse, V1

This repository includes the trained transformer-based model for the small subset Cryo2StructData dataset, as well as the training and validation split files. These split files categorize density map EMD-IDs into low, medium, and high resolutions. The training and validation sets contain 1680 and 187 density maps, respectively, with a split ratio o...

ResolutionBasedSplits.xlsx

Oct 26, 2023 - Cryo2StructData : Trained Model and Data Splits (Small Subset)

MS Excel Spreadsheet - 25.9 KB -

Train and Validation Splits Based on Resolution for Small Subset of Cryo2StructData dataset.

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