DMTC Dataverse is a dataverse of the Digital Metabolic Twin Centre. We publish here our large-scale datasets. Please make sure that you cite correctly the parent publications for each dataverse and dataset.
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1 to 10 of 27 Results
FemaleInfantWBMs_day2
Jul 1, 2025 - Female infant-WBMs with microbiome
Thiele, Ines, 2025, "FemaleInfantWBMs_day2", https://doi.org/10.7910/DVN/QDFRZG, Harvard Dataverse, V1
48 Female infant-WBMs with microbiome
Female infant-WBMs with microbiome(University of Galway, Ireland)
Jul 1, 2025Infant-WBMs (male, female, day 1 - 180)
This dataverse contains the 48 female infant-WBMs at day 2 which have been personalised with microbiomes.
Replication Data for: Metabolic modelling links gut microbiota to metabolic perturbations in Parkinson's disease
May 5, 2025 - Human Metabolic Models and Reconstructions
Hensen, Tim, 2025, "Replication Data for: Metabolic modelling links gut microbiota to metabolic perturbations in Parkinson's disease", https://doi.org/10.7910/DVN/PUTXL9, Harvard Dataverse, V1, UNF:6:zIVDsrnZgfh0uxplYeyHsA== [fileUNF]
*** DESCRIPTION *** Input data for replication of paper titled: "Metabolic modelling links gut microbiota to metabolic perturbations in Parkinson's disease". *** CONTENT *** - ApolloAgora2panSpecies: Folder with AGORA2 + APOLLO pan species gut microbe reconstructions. - luo_2024_replicated_PD_mets.xlsx: List of metabolites for which a replicated as...
Female infant-WBMs
Apr 22, 2025 - Infant-WBMs (male, female, day 1 - 180)
Thiele, Ines, 2025, "Female infant-WBMs", https://doi.org/10.7910/DVN/SGQUEH, Harvard Dataverse, V1
Female infant-WBMs, day 1 - 180.
Male infant-WBMs
Apr 22, 2025 - Infant-WBMs (male, female, day 1 - 180)
Thiele, Ines, 2025, "Male infant-WBMs", https://doi.org/10.7910/DVN/ECAJUW, Harvard Dataverse, V1
Male infant-WBMs, day 1 -180
Infant-WBMs (male, female, day 1 - 180)(University of Galway, Ireland)
Apr 21, 2025Human Metabolic Models and Reconstructions
This dataverse contains the WBMs for male and femal infants, parameterised for day 1 - 180, as published by Zaunseder et al., doi: 10.1016/j.cmet.2024.05.006.
Human Metabolic Models and Reconstructions(University of Galway, Ireland)
Apr 21, 2025
This dataverse contains the collection of human metabolism reconstructions.
AGORA2 - collection of 1,749 pan species models (.mat)
Apr 1, 2025 - APOLLO Dataverse
Thiele, Ines, 2025, "AGORA2 - collection of 1,749 pan species models (.mat)", https://doi.org/10.7910/DVN/LAO2XM, Harvard Dataverse, V1
Collection of pan-species models from the AGORA2 resource. Individual reconstructions were downloaded on 11-Nov-2024. The taxonomic information was generated through the updateTaxonomyInfoAgora.m function in the COBRA toolbox. Pan-species were generated through the createPanSpecies.m function in the COBRA toolbox with the updated taxonomic informat...
AGORA2 and Apollo - collection of 1,922 pan-species models (.mat)
Apr 1, 2025 - APOLLO Dataverse
Thiele, Ines, 2025, "AGORA2 and Apollo - collection of 1,922 pan-species models (.mat)", https://doi.org/10.7910/DVN/JAXTWY, Harvard Dataverse, V1
Individual reconstructions for AGORA2 were downloaded on 11-Nov-2024. The taxonomic information was generated through the updateTaxonomyInfoAgora.m function in the COBRA toolbox. Individual reconstructions for APOLLO were downloaded on 22-nov-2024. The pan-species models were generated with createPanSpecies.m function in the COBRA toolbox on 25-nov...
Kraken2 database for Apollo and Agora2
Feb 14, 2025 - APOLLO Dataverse
Barton, Wiley, 2025, "Kraken2 database for Apollo and Agora2", https://doi.org/10.7910/DVN/THOTRP, Harvard Dataverse, V1
Kraken database... TBD
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