DMTC Dataverse

DMTC Dataverse is a dataverse of the Digital Metabolic Twin Centre. We publish here our large-scale datasets. Please make sure that you cite correctly the parent publications for each dataverse and dataset.

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11 to 20 of 22 Results

MicroMap - AGORA2 order visualisations Dec 4, 2024 - MicroMap Dataverse Thiele, Ines, 2024, "MicroMap - AGORA2 order visualisations", https://doi.org/10.7910/DVN/AMYTVR, Harvard Dataverse, V1 This dataset contains the visualisations for the 78 pan-order genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 family visualisations Dec 4, 2024 - MicroMap Dataverse Thiele, Ines, 2024, "MicroMap - AGORA2 family visualisations", https://doi.org/10.7910/DVN/8UYEZ8, Harvard Dataverse, V1 This dataset contains the visualisations for the 152 pan-family genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 genus visualisations Dec 4, 2024 - MicroMap Dataverse Thiele, Ines, 2024, "MicroMap - AGORA2 genus visualisations", https://doi.org/10.7910/DVN/T8MZSX, Harvard Dataverse, V1 This dataset contains the visualisations for the 422 pan-genus genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 species visualisations Dec 4, 2024 - MicroMap Dataverse Thiele, Ines, 2024, "MicroMap - AGORA2 species visualisations", https://doi.org/10.7910/DVN/ENQSOO, Harvard Dataverse, V1 This dataset contains the visualisations for the 1,749 pan-species genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 strain visualisations Dec 4, 2024 - MicroMap Dataverse Thiele, Ines, 2024, "MicroMap - AGORA2 strain visualisations", https://doi.org/10.7910/DVN/0PIUJK, Harvard Dataverse, V1 This dataset contains the visualisations for the 7,302 strain genome-scale metabolic reconstructions contained within AGORA2 on the MicroMap. (2024-12-02)
MicroMap - APOLLO species visualisations Dec 4, 2024 - MicroMap Dataverse Thiele, Ines, 2024, "MicroMap - APOLLO species visualisations", https://doi.org/10.7910/DVN/ZGXF6F, Harvard Dataverse, V1 This dataset contains the visualisations for the 595 pan-species genome-scale metabolic reconstructions derived from APOLLO on the MicroMap.
MicroMap - APOLLO strain visualisations Dec 4, 2024 - MicroMap Dataverse Thiele, Ines, 2024, "MicroMap - APOLLO strain visualisations", https://doi.org/10.7910/DVN/BKHMS4, Harvard Dataverse, V1 This dataset contains the visualisations for the 247,092 strain genome-scale metabolic reconstructions contained within APOLLO on the MicroMap.
SI Tables S7b, S9a, S9b, Dec 1, 2024 - APOLLO Dataverse Thiele, Ines, 2024, "SI Tables S7b, S9a, S9b,", https://doi.org/10.7910/DVN/HCX5P0, Harvard Dataverse, V1 Supplemental Tables
APOLLO - collection of 247,092 curated microbial metabolic reconstructions (sbml) Nov 25, 2024 - APOLLO Dataverse Thiele, Ines, 2024, "APOLLO - collection of 247,092 curated microbial metabolic reconstructions (sbml)", https://doi.org/10.7910/DVN/RL7E7G, Harvard Dataverse, V1 This dataset contains the APOLLO microbial metabolic reconstructions in SBML format. Please cite: Heinken et al., A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites, Cell Systems (2024, accepted).
APOLLO - 14,451 microbiome community metabolic models Nov 25, 2024 - APOLLO Dataverse Thiele, Ines, 2024, "APOLLO - 14,451 microbiome community metabolic models", https://doi.org/10.7910/DVN/SOBQ4R, Harvard Dataverse, V1 This dataset contains the 14,451 APOLLO microbiome community models in Matlab (.mat) format. Please cite: Heinken et al., A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites, Cell Systems (2024, accepted).

MicroMap - AGORA2 order visualisations

Dec 4, 2024 - MicroMap Dataverse

Thiele, Ines, 2024, "MicroMap - AGORA2 order visualisations", https://doi.org/10.7910/DVN/AMYTVR, Harvard Dataverse, V1

This dataset contains the visualisations for the 78 pan-order genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.

MicroMap - AGORA2 family visualisations

Dec 4, 2024 - MicroMap Dataverse

Thiele, Ines, 2024, "MicroMap - AGORA2 family visualisations", https://doi.org/10.7910/DVN/8UYEZ8, Harvard Dataverse, V1

This dataset contains the visualisations for the 152 pan-family genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.

MicroMap - AGORA2 genus visualisations

Dec 4, 2024 - MicroMap Dataverse

Thiele, Ines, 2024, "MicroMap - AGORA2 genus visualisations", https://doi.org/10.7910/DVN/T8MZSX, Harvard Dataverse, V1

This dataset contains the visualisations for the 422 pan-genus genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.

MicroMap - AGORA2 species visualisations

Dec 4, 2024 - MicroMap Dataverse

Thiele, Ines, 2024, "MicroMap - AGORA2 species visualisations", https://doi.org/10.7910/DVN/ENQSOO, Harvard Dataverse, V1

This dataset contains the visualisations for the 1,749 pan-species genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.

MicroMap - AGORA2 strain visualisations

Dec 4, 2024 - MicroMap Dataverse

Thiele, Ines, 2024, "MicroMap - AGORA2 strain visualisations", https://doi.org/10.7910/DVN/0PIUJK, Harvard Dataverse, V1

This dataset contains the visualisations for the 7,302 strain genome-scale metabolic reconstructions contained within AGORA2 on the MicroMap. (2024-12-02)

MicroMap - APOLLO species visualisations

Dec 4, 2024 - MicroMap Dataverse

Thiele, Ines, 2024, "MicroMap - APOLLO species visualisations", https://doi.org/10.7910/DVN/ZGXF6F, Harvard Dataverse, V1

This dataset contains the visualisations for the 595 pan-species genome-scale metabolic reconstructions derived from APOLLO on the MicroMap.

MicroMap - APOLLO strain visualisations

Dec 4, 2024 - MicroMap Dataverse

Thiele, Ines, 2024, "MicroMap - APOLLO strain visualisations", https://doi.org/10.7910/DVN/BKHMS4, Harvard Dataverse, V1

This dataset contains the visualisations for the 247,092 strain genome-scale metabolic reconstructions contained within APOLLO on the MicroMap.

SI Tables S7b, S9a, S9b,

Dec 1, 2024 - APOLLO Dataverse

Thiele, Ines, 2024, "SI Tables S7b, S9a, S9b,", https://doi.org/10.7910/DVN/HCX5P0, Harvard Dataverse, V1

Supplemental Tables

APOLLO - collection of 247,092 curated microbial metabolic reconstructions (sbml)

Nov 25, 2024 - APOLLO Dataverse

Thiele, Ines, 2024, "APOLLO - collection of 247,092 curated microbial metabolic reconstructions (sbml)", https://doi.org/10.7910/DVN/RL7E7G, Harvard Dataverse, V1

This dataset contains the APOLLO microbial metabolic reconstructions in SBML format. Please cite: Heinken et al., A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites, Cell Systems (2024, accepted).

APOLLO - 14,451 microbiome community metabolic models

Nov 25, 2024 - APOLLO Dataverse

Thiele, Ines, 2024, "APOLLO - 14,451 microbiome community metabolic models", https://doi.org/10.7910/DVN/SOBQ4R, Harvard Dataverse, V1

This dataset contains the 14,451 APOLLO microbiome community models in Matlab (.mat) format. Please cite: Heinken et al., A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites, Cell Systems (2024, accepted).

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