The MicroMap dataverse contains the data created for the publication TBD. The MicroMap is a manually curated microbiome metabolic network visualisation derived from the AGORA2 resource of genome-scale metabolic reconstructions, encompassing 7,302 microbes. The MicroMap contains 5,064 unique reactions and 3,499 unique metabolites, including for 98 drugs. The MicroMap allows users to intuitively explore microbiome metabolism, inspect microbial metabolic capabilities, and visualise computational modelling results.
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MicroMap - CellDesigner xml and pdf formats
MicroMap - CellDesigner xml and pdf formats
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - CellDesigner xml and pdf formats", https://doi.org/10.7910/DVN/FZKMJ8, Harvard Dataverse, V1
The CellDesigner xml format allows for MicroMap inspection using the CellDesigner software available at https://www.celldesigner.org, as well as computational modelling and visualisation using the COBRA Toolbox https://opencobra.github.io The pdf format allows for map inspection. We suggest to download the file and 'open with' a web browser of your...
MicroMap - AGORA2 class visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 class visualisations", https://doi.org/10.7910/DVN/PAHQH4, Harvard Dataverse, V1
This dataset contains the visualisations for the 39 pan-class genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 order visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 order visualisations", https://doi.org/10.7910/DVN/AMYTVR, Harvard Dataverse, V1
This dataset contains the visualisations for the 78 pan-order genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 family visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 family visualisations", https://doi.org/10.7910/DVN/8UYEZ8, Harvard Dataverse, V1
This dataset contains the visualisations for the 152 pan-family genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 genus visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 genus visualisations", https://doi.org/10.7910/DVN/T8MZSX, Harvard Dataverse, V1
This dataset contains the visualisations for the 422 pan-genus genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 species visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 species visualisations", https://doi.org/10.7910/DVN/ENQSOO, Harvard Dataverse, V1
This dataset contains the visualisations for the 1,749 pan-species genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 strain visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 strain visualisations", https://doi.org/10.7910/DVN/0PIUJK, Harvard Dataverse, V1
This dataset contains the visualisations for the 7,302 strain genome-scale metabolic reconstructions contained within AGORA2 on the MicroMap. (2024-12-02)
MicroMap - APOLLO species visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - APOLLO species visualisations", https://doi.org/10.7910/DVN/ZGXF6F, Harvard Dataverse, V1
This dataset contains the visualisations for the 595 pan-species genome-scale metabolic reconstructions derived from APOLLO on the MicroMap.
MicroMap - APOLLO strain visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - APOLLO strain visualisations", https://doi.org/10.7910/DVN/BKHMS4, Harvard Dataverse, V1
This dataset contains the visualisations for the 247,092 strain genome-scale metabolic reconstructions contained within APOLLO on the MicroMap.
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