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11 to 20 of 27 Results
APOLLO - collection of 595 pan species models (.mat)
Feb 11, 2025 - APOLLO Dataverse
Thiele, Ines, 2025, "APOLLO - collection of 595 pan species models (.mat)", https://doi.org/10.7910/DVN/PIZCBI, Harvard Dataverse, V1
A collection of pan-species models generated from the APOLLO resource. Individual reconstructions were downloaded on 22-nov-2024. The pan-species models were generated with createPanSpecies.m function in the COBRA toolbox on 25-nov-2024. The taxonomic assignments used in the createPanSpecies.m function were obtained from the APOLLO supplementary ma...
MicroMap - CellDesigner xml and pdf formats
MicroMap - CellDesigner xml and pdf formats
Dec 4, 2024 - MicroMap Dataverse
Thiele, Ines, 2024, "MicroMap - CellDesigner xml and pdf formats", https://doi.org/10.7910/DVN/FZKMJ8, Harvard Dataverse, V1
The CellDesigner xml format allows for MicroMap inspection using the CellDesigner software available at https://www.celldesigner.org, as well as computational modelling and visualisation using the COBRA Toolbox https://opencobra.github.io The pdf format allows for map inspection. We suggest to download the file and 'open with' a web browser of your...
MicroMap - AGORA2 class visualisations
Dec 4, 2024 - MicroMap Dataverse
Thiele, Ines, 2024, "MicroMap - AGORA2 class visualisations", https://doi.org/10.7910/DVN/PAHQH4, Harvard Dataverse, V1
This dataset contains the visualisations for the 39 pan-class genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 order visualisations
Dec 4, 2024 - MicroMap Dataverse
Thiele, Ines, 2024, "MicroMap - AGORA2 order visualisations", https://doi.org/10.7910/DVN/AMYTVR, Harvard Dataverse, V1
This dataset contains the visualisations for the 78 pan-order genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 family visualisations
Dec 4, 2024 - MicroMap Dataverse
Thiele, Ines, 2024, "MicroMap - AGORA2 family visualisations", https://doi.org/10.7910/DVN/8UYEZ8, Harvard Dataverse, V1
This dataset contains the visualisations for the 152 pan-family genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 genus visualisations
Dec 4, 2024 - MicroMap Dataverse
Thiele, Ines, 2024, "MicroMap - AGORA2 genus visualisations", https://doi.org/10.7910/DVN/T8MZSX, Harvard Dataverse, V1
This dataset contains the visualisations for the 422 pan-genus genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 species visualisations
Dec 4, 2024 - MicroMap Dataverse
Thiele, Ines, 2024, "MicroMap - AGORA2 species visualisations", https://doi.org/10.7910/DVN/ENQSOO, Harvard Dataverse, V1
This dataset contains the visualisations for the 1,749 pan-species genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
MicroMap - AGORA2 strain visualisations
Dec 4, 2024 - MicroMap Dataverse
Thiele, Ines, 2024, "MicroMap - AGORA2 strain visualisations", https://doi.org/10.7910/DVN/0PIUJK, Harvard Dataverse, V1
This dataset contains the visualisations for the 7,302 strain genome-scale metabolic reconstructions contained within AGORA2 on the MicroMap. (2024-12-02)
MicroMap - APOLLO species visualisations
Dec 4, 2024 - MicroMap Dataverse
Thiele, Ines, 2024, "MicroMap - APOLLO species visualisations", https://doi.org/10.7910/DVN/ZGXF6F, Harvard Dataverse, V1
This dataset contains the visualisations for the 595 pan-species genome-scale metabolic reconstructions derived from APOLLO on the MicroMap.
MicroMap - APOLLO strain visualisations
Dec 4, 2024 - MicroMap Dataverse
Thiele, Ines, 2024, "MicroMap - APOLLO strain visualisations", https://doi.org/10.7910/DVN/BKHMS4, Harvard Dataverse, V1
This dataset contains the visualisations for the 247,092 strain genome-scale metabolic reconstructions contained within APOLLO on the MicroMap.
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