DMTC Dataverse is a dataverse of the Digital Metabolic Twin Centre. We publish here our large-scale datasets. Please make sure that you cite correctly the parent publications for each dataverse and dataset.
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21 to 27 of 27 Results
MicroMap Dataverse(University of Galway, Ireland)
Dec 4, 2024
The MicroMap dataverse contains the data created for the publication TBD. The MicroMap is a manually curated microbiome metabolic network visualisation derived from the AGORA2 resource of genome-scale metabolic reconstructions, encompassing 7,302 microbes. The MicroMap contains 5,064 unique reactions and 3,499 unique metabolites, including for 98 d...
SI Tables S7b, S9a, S9b,
Dec 1, 2024 - APOLLO Dataverse
Thiele, Ines, 2024, "SI Tables S7b, S9a, S9b,", https://doi.org/10.7910/DVN/HCX5P0, Harvard Dataverse, V1
Supplemental Tables
APOLLO - collection of 247,092 curated microbial metabolic reconstructions (sbml)
Nov 25, 2024 - APOLLO Dataverse
Thiele, Ines, 2024, "APOLLO - collection of 247,092 curated microbial metabolic reconstructions (sbml)", https://doi.org/10.7910/DVN/RL7E7G, Harvard Dataverse, V1
This dataset contains the APOLLO microbial metabolic reconstructions in SBML format. Please cite: Heinken et al., A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites, Cell Systems (2024, accepted).
APOLLO - 14,451 microbiome community metabolic models
Nov 25, 2024 - APOLLO Dataverse
Thiele, Ines, 2024, "APOLLO - 14,451 microbiome community metabolic models", https://doi.org/10.7910/DVN/SOBQ4R, Harvard Dataverse, V1
This dataset contains the 14,451 APOLLO microbiome community models in Matlab (.mat) format. Please cite: Heinken et al., A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites, Cell Systems (2024, accepted).
APOLLO paper data
Nov 25, 2024 - APOLLO Dataverse
Thiele, Ines, 2024, "APOLLO paper data", https://doi.org/10.7910/DVN/VPRMTP, Harvard Dataverse, V1
Data required to reproduce the simulations and analyses shown in the paper. Please cite: Heinken et al., A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites, Cell Systems (2024, accepted).
APOLLO - collection of 247,092 curated microbial metabolic reconstructions (.mat)
Nov 25, 2024 - APOLLO Dataverse
Thiele, Ines, 2024, "APOLLO - collection of 247,092 curated microbial metabolic reconstructions (.mat)", https://doi.org/10.7910/DVN/MQH4HO, Harvard Dataverse, V1
This dataset contains the APOLLO microbial metabolic reconstructions in Matlab (.mat) format. Please cite: Heinken et al., A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites, Cell Systems (2024, accepted).
APOLLO Dataverse(Digital Metabolic Twin Centre, University of Galway, Ireland)
Nov 25, 2024
APOLLO is a collection of 247,092 curated microbial metabolic reconstructions and 14,451 microbiome community metabolic models.
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