The MicroMap dataverse contains the data created for the publication TBD. The MicroMap is a manually curated microbiome metabolic network visualisation derived from the AGORA2 resource of genome-scale metabolic reconstructions, encompassing 7,302 microbes. The MicroMap contains 5,064 unique reactions and 3,499 unique metabolites, including for 98 drugs. The MicroMap allows users to intuitively explore microbiome metabolism, inspect microbial metabolic capabilities, and visualise computational modelling results.
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MicroMap - CellDesigner xml and pdf formats
MicroMap - CellDesigner xml and pdf formats
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - CellDesigner xml and pdf formats", https://doi.org/10.7910/DVN/FZKMJ8, Harvard Dataverse, V1
The CellDesigner xml format allows for MicroMap inspection using the CellDesigner software available at https://www.celldesigner.org, as well as computational modelling and visualisation using the COBRA Toolbox https://opencobra.github.io The pdf format allows for map inspection. We suggest to download the file and 'open with' a web browser of your...
MicroMap.pdf
Dec 4, 2024 - MicroMap - CellDesigner xml and pdf formats
Adobe PDF - 20.6 MB - MD5: 8ff0a18f9aadc50834d913ef4552b185
MicroMap.xml
Dec 4, 2024 - MicroMap - CellDesigner xml and pdf formats
XML - 32.1 MB - MD5: b7ea02c2430fb8b809af889fd6fadae9
MicroMap - AGORA2 class visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 class visualisations", https://doi.org/10.7910/DVN/PAHQH4, Harvard Dataverse, V1
This dataset contains the visualisations for the 39 pan-class genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
AGORA2byClass.tar.gz
Dec 4, 2024 - MicroMap - AGORA2 class visualisations
Gzip Archive - 61.8 MB - MD5: 8f19c7b7b849b917452512fdcf8525da
MicroMap - AGORA2 order visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 order visualisations", https://doi.org/10.7910/DVN/AMYTVR, Harvard Dataverse, V1
This dataset contains the visualisations for the 78 pan-order genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
AGORA2byOrder.tar.gz
Dec 4, 2024 - MicroMap - AGORA2 order visualisations
Gzip Archive - 123.5 MB - MD5: 4fe36e355f1cca04459c629c33dff136
MicroMap - AGORA2 family visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 family visualisations", https://doi.org/10.7910/DVN/8UYEZ8, Harvard Dataverse, V1
This dataset contains the visualisations for the 152 pan-family genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
AGORA2byFamily.tar.gz
Dec 4, 2024 - MicroMap - AGORA2 family visualisations
Gzip Archive - 240.8 MB - MD5: d51543dd75ceb9d7b7a7cbe8cd65b400
MicroMap - AGORA2 genus visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 genus visualisations", https://doi.org/10.7910/DVN/T8MZSX, Harvard Dataverse, V1
This dataset contains the visualisations for the 422 pan-genus genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
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