The MicroMap dataverse contains the data created for the publication TBD. The MicroMap is a manually curated microbiome metabolic network visualisation derived from the AGORA2 resource of genome-scale metabolic reconstructions, encompassing 7,302 microbes. The MicroMap contains 5,064 unique reactions and 3,499 unique metabolites, including for 98 drugs. The MicroMap allows users to intuitively explore microbiome metabolism, inspect microbial metabolic capabilities, and visualise computational modelling results.
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11 to 20 of 276 Results
AGORA2byGenus.tar.gz
Dec 4, 2024 - MicroMap - AGORA2 genus visualisations
Gzip Archive - 668.0 MB - MD5: 1f5cf131dbbd5c90a19d5f810ba56b7b
MicroMap - AGORA2 species visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 species visualisations", https://doi.org/10.7910/DVN/ENQSOO, Harvard Dataverse, V1
This dataset contains the visualisations for the 1,749 pan-species genome-scale metabolic reconstructions derived from AGORA2 on the MicroMap.
AGORA2bySpecies_1.tar.gz
Dec 4, 2024 - MicroMap - AGORA2 species visualisations
Gzip Archive - 1.5 GB - MD5: 342e2fdb357f6abe230e2a704b5713c8
AGORA2bySpecies_2.tar.gz
Dec 4, 2024 - MicroMap - AGORA2 species visualisations
Gzip Archive - 1.2 GB - MD5: 1a037fae00efa2c79f22582264de4524
MicroMap - AGORA2 strain visualisations
Dec 4, 2024
Thiele, Ines, 2024, "MicroMap - AGORA2 strain visualisations", https://doi.org/10.7910/DVN/0PIUJK, Harvard Dataverse, V1
This dataset contains the visualisations for the 7,302 strain genome-scale metabolic reconstructions contained within AGORA2 on the MicroMap. (2024-12-02)
AGORA2byStrain_1.tar.gz
Dec 4, 2024 - MicroMap - AGORA2 strain visualisations
Gzip Archive - 1.5 GB - MD5: 51d62b560ac049e58d5d9f41162e5fc8
AGORA2byStrain_2.tar.gz
Dec 4, 2024 - MicroMap - AGORA2 strain visualisations
Gzip Archive - 1.5 GB - MD5: 420f994a9394e5b6f9022eef9a9abede
AGORA2byStrain_3.tar.gz
Dec 4, 2024 - MicroMap - AGORA2 strain visualisations
Gzip Archive - 1.5 GB - MD5: c8bad014144bb324dd2b2c617e27528a
AGORA2byStrain_4.tar.gz
Dec 4, 2024 - MicroMap - AGORA2 strain visualisations
Gzip Archive - 1.5 GB - MD5: 20e78ea689cae683138a14506f17ecc2
AGORA2byStrain_5.tar.gz
Dec 4, 2024 - MicroMap - AGORA2 strain visualisations
Gzip Archive - 1.5 GB - MD5: 128660a6724853f46bee52da2d916db4
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